RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 PEX7O00628 323 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 C1orf100Q5SVJ3 147 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 AICDAQ9GZX7 198 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 LOC105371242A0A075B767 164 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 COX6B1P14854 86 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 SAMD13Q5VXD3 122 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 TRIP11Q15643 1979 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 SYNGR3O43761 229 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 SAA1P0DJI8 122 aaPredicted RBP13.16□□□□□ -0.3
CHD4-210ENST00000544040 ZNF708P17019 499 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 WDYHV1Q96HA8 205 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 PIMREGQ9BSJ6 248 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 TRAV8-2A0A0B4J237 113 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 H3BUT2 72 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 SFTPCP11686 197 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 RIPPLY3P57055 190 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 NPCDR1Q9BY65 106 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 FNDC4Q9H6D8 234 aaPredicted RBP13.16□□□□□ -0.3
CHD4-210ENST00000544040 IL36BQ9NZH7 164 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 JPT1Q9UK76 154 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 SPAG17Q6Q759 2223 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 SLC22A18ASQ8N1D0 253 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 HOXA5P20719 270 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 CD69Q07108 199 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 IGFBP2P18065 325 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 RNASE4P34096 147 aaKnown RBP13.15□□□□□ -0.3
CHD4-210ENST00000544040 ASPHD2Q6ICH7 369 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 C2orf88Q9BSF0 95 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 ATP5G3P48201 142 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 EFNB1P98172 346 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 P2RY6Q15077 328 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 GFI1BQ5VTD9 330 aa13.15□□□□□ -0.3
CHD4-210ENST00000544040 BTAF1O14981 1849 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 PKIBQ9C010 78 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 MEGF9Q9H1U4 602 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 AKAP11Q9UKA4 1901 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 ASIPP42127 132 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 TBR1Q16650 682 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 ZNRF1Q8ND25 227 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FOXA2Q9Y261 457 aaPredicted RBP13.14□□□□□ -0.31
CHD4-210ENST00000544040 PRR33A8MZF0 331 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 C1orf174Q8IYL3 243 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 NUP214P35658 2090 aaPredicted RBP13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A10PA6NDY2 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A18PA6NE21 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A16PA6NEW6 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A20PA6NIJ5 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A8PA6NJQ4 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A7PA6NKC0 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A22PA8MWA6 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A12PA8MX19 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A5PA8MXJ8 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A23PA8MXZ1 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 NPIPB4C9JG80 1138 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A15PP0C7V4 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A13PP0C7W8 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A14PP0C7W9 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 FAM90A24PP0C7X0 464 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 TEX45Q8NA69 505 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 RCC1LQ96I51 464 aaKnown RBP13.14□□□□□ -0.31
CHD4-210ENST00000544040 SDHCQ99643 169 aaPredicted RBP13.14□□□□□ -0.31
CHD4-210ENST00000544040 RPRMQ9NS64 109 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 ZNFX1Q9P2E3 1918 aaKnown RBP13.14□□□□□ -0.31
CHD4-210ENST00000544040 PAPPA-AS1Q5QFB9 102 aa13.14□□□□□ -0.31
CHD4-210ENST00000544040 ITLN2Q8WWU7 325 aaPredicted RBP13.14□□□□□ -0.31
CHD4-210ENST00000544040 DUSP15Q9H1R2 295 aaPredicted RBP13.14□□□□□ -0.31
CHD4-210ENST00000544040 TCF23Q7RTU1 214 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 CLDND2Q8NHS1 167 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 CLEC7AQ9BXN2 247 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 C11orf68Q9H3H3 251 aaKnown RBP13.13□□□□□ -0.31
CHD4-210ENST00000544040 TMEM106BQ9NUM4 274 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 OR9G1Q8NH87 305 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 NEUROG1Q92886 237 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 A0A1W2PQF6 199 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 PF4P02776 101 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 DUX3Q96PT4 197 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 TRGV3P03979 118 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 LEPP41159 167 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 SAPCD1Q5SSQ6 148 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 ATP1A1-AS1Q5TC04 95 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 MSGN1A6NI15 193 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 TMEM50AO95807 157 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 GPR183P32249 361 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 CDCP2Q5VXM1 449 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 CTSBP07858 339 aa13.13□□□□□ -0.31
CHD4-210ENST00000544040 PQLC2LA1A4F0 135 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 SMAD7O15105 426 aaKnown RBP13.12□□□□□ -0.31
CHD4-210ENST00000544040 C19orf24Q9BVV8 132 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 C19orf67A6NJJ6 358 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 PRB4P10163 310 aaPredicted RBP13.12□□□□□ -0.31
CHD4-210ENST00000544040 RAB9AP51151 201 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 TMEM250H0YL14 139 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 HTN3P15516 51 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 ZP1P60852 638 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 ZFC3H1O60293 1989 aaKnown RBP13.12□□□□□ -0.31
CHD4-210ENST00000544040 COL22A1Q8NFW1 1626 aaPredicted RBP13.12□□□□□ -0.31
CHD4-210ENST00000544040 PROB1E7EW31 1015 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 MESP2Q0VG99 397 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 FAM71F2Q6NXP2 309 aa13.12□□□□□ -0.31
CHD4-210ENST00000544040 NBEAP1P0C6P0 100 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms