RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 DMDP11532 3685 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 IL6RP08887 468 aaPredicted RBP8.14□□□□□ -1.11
SS18-205ENST00000542420 OR9G9P0C7N8 305 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 FGF7P21781 194 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 BMP5P22003 454 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 PSMB3P49720 205 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 EDDM3BP56851 147 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 KIAA0141Q14154 515 aaPredicted RBP8.14□□□□□ -1.11
SS18-205ENST00000542420 HAGHQ16775 308 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 OR8G2PQ6IF36 304 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 ZNRF1Q8ND25 227 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 RAB24Q969Q5 203 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 VKORC1Q9BQB6 163 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 DCTN5Q9BTE1 182 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 NPCDR1Q9BY65 106 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 PRR14LQ5THK1 2151 aa8.14□□□□□ -1.11
SS18-205ENST00000542420 VPS13AQ96RL7 3174 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 IGHV3OR15-7A0A075B7D8 119 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 SOD3P08294 240 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 ADIPOQQ15848 244 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 CT45A1Q5HYN5 189 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 FAM90A2PQ658T7 463 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 SPACA3Q8IXA5 215 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 HIST3H2BBQ8N257 126 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 CISD2Q8N5K1 135 aaKnown RBP8.13□□□□□ -1.11
SS18-205ENST00000542420 LINC00311Q8N616 119 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 CYB561D1Q8N8Q1 229 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 BEND2Q8NDZ0 799 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 CT45A3Q8NHU0 189 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 ATG101Q9BSB4 218 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 QTRT1Q9BXR0 403 aaKnown RBP8.13□□□□□ -1.11
SS18-205ENST00000542420 TMEM14BQ9NUH8 114 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 TMEM140Q9NV12 185 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 FKBP11Q9NYL4 201 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 KAAG1Q9UBP8 84 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 PRNDQ9UKY0 176 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 RFNGQ9Y644 331 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 DPRXA6NFQ7 191 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 PRSS46E5RG02 174 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 INS-IGF2F8WCM5 200 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 RBMXL2O75526 392 aaKnown RBP8.13□□□□□ -1.11
SS18-205ENST00000542420 IFNA17P01571 189 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 OPRK1P41145 380 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 RND2P52198 227 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 MRPS11P82912 194 aaKnown RBP8.13□□□□□ -1.11
SS18-205ENST00000542420 EFNB3Q15768 340 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 FBXL19-AS1Q494R0 122 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 SPRNQ5BIV9 151 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 GFI1BQ5VTD9 330 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 VHLLQ6RSH7 139 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 OR13D1Q8NGV5 346 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 LHX4Q969G2 390 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 GNG13Q9P2W3 67 aa8.13□□□□□ -1.11
SS18-205ENST00000542420 TET2Q6N021 2002 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 CNOT1A5YKK6 2376 aaKnown RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 EP300Q09472 2414 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 A0A1W2PPE2 198 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 DEFB108AA8MXU0 73 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 TNFRSF13BO14836 293 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 OR2C1O95371 312 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 TFF1P04155 84 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 THBDP07204 575 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 G0S2P27469 103 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 CD1BP29016 333 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 ZNF134P52741 427 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 HSPE1P61604 102 aaKnown RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 RTL8BQ17RB0 113 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 ACSM6Q6P461 480 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 TCF23Q7RTU1 214 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 RPP25LQ8N5L8 163 aaKnown RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 OR10G9Q8NGN4 311 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 OR10G7Q8NGN6 311 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 OR5R1Q8NH85 324 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 NEIL1Q96FI4 390 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 TCF19Q9Y242 345 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 PUS1Q9Y606 427 aaKnown RBP eCLIP8.12□□□□□ -1.11
SS18-205ENST00000542420 SAA2-SAA4A0A096LPE2 208 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 GFRA3O60609 400 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 CYB5R3P00387 301 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 OR4A8P0C604 315 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 SAA2P0DJI9 122 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 FFAR4Q5NUL3 377 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 FAM53AQ6NSI3 398 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 ZNF833PQ6ZTB9 187 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 OR4A5Q8NH83 315 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 OSR1Q8TAX0 266 aaPredicted RBP8.12□□□□□ -1.11
SS18-205ENST00000542420 RND1Q92730 232 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 ZDHHC16Q969W1 377 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 GPR61Q9BZJ8 451 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 VSIRQ9H7M9 311 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 SDF2L1Q9HCN8 221 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 BET1LQ9NYM9 111 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 MSRB2Q9Y3D2 182 aa8.12□□□□□ -1.11
SS18-205ENST00000542420 PPIAL4EA0A075B759 164 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 PPIAL4DF5H284 164 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 TMEM178BH3BS89 294 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 PPIAL4FP0DN26 164 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 NDUFA6P56556 154 aa8.11□□□□□ -1.11
SS18-205ENST00000542420 MEF2BQ02080 365 aaPredicted RBP8.11□□□□□ -1.11
SS18-205ENST00000542420 RPL39P5Q59GN2 51 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms