RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 S100A11P31949 105 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 UBE2KP61086 200 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 GPR157Q5UAW9 335 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 KCNRGQ8N5I3 272 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 AJUBAQ96IF1 538 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 MAGT1Q9H0U3 335 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 PLSCR3Q9NRY6 295 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 FKBP11Q9NYL4 201 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 PRNDQ9UKY0 176 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 FOXA2Q9Y261 457 aaPredicted RBP14.27□□□□□ -0.12
CLIP1-215ENST00000541108 BOLA1Q9Y3E2 137 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 WSB1Q9Y6I7 421 aa14.27□□□□□ -0.12
CLIP1-215ENST00000541108 CR1P17927 2039 aa14.27□□□□□ -0.13
CLIP1-215ENST00000541108 PRRC2AP48634 2157 aaKnown RBP14.27□□□□□ -0.13
CLIP1-215ENST00000541108 C15orf61A6NNL5 157 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 UPK2O00526 184 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 SSSCA1O60232 199 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 VENTXO95231 258 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TAS2R30P59541 319 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 SPCS3P61009 180 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 VAMP2P63027 116 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 VMA21Q3ZAQ7 101 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TMUB2Q71RG4 321 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 PIP4P2Q8N4L2 257 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 MAPK1IP1LQ8NDC0 245 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 WFDC11Q8NEX6 87 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TSNAXQ99598 290 aaKnown RBP14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TMEM14BQ9NUH8 114 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 ZNF257Q9Y2Q1 563 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 PDZD2O15018 2839 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TRAV3A0A0B4J244 114 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 KBTBD11O94819 623 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 NXPH3O95157 252 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 HKR1P10072 659 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 RPL12P30050 165 aaKnown RBP14.26□□□□□ -0.13
CLIP1-215ENST00000541108 DYNAPQ8N1N2 210 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TEX45Q8NA69 505 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TMEM167AQ8TBQ9 72 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 QTRT1Q9BXR0 403 aaKnown RBP14.26□□□□□ -0.13
CLIP1-215ENST00000541108 ARL6Q9H0F7 186 aa14.26□□□□□ -0.13
CLIP1-215ENST00000541108 LYRM2Q9NU23 88 aaPredicted RBP14.26□□□□□ -0.13
CLIP1-215ENST00000541108 TRAV40A0A0B4J280 105 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 GPR137BO60478 399 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 AP2S1P53680 142 aaPredicted RBP14.25□□□□□ -0.13
CLIP1-215ENST00000541108 BPIFB3P59826 476 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 EBI3Q14213 229 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 OR2C3Q8N628 320 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 RITA1Q96K30 269 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 SMIM8Q96KF7 97 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 CIB3Q96Q77 187 aaPredicted RBP14.25□□□□□ -0.13
CLIP1-215ENST00000541108 GON7Q9BXV9 100 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 ITPR2Q14571 2701 aa14.25□□□□□ -0.13
CLIP1-215ENST00000541108 SPDEFO95238 335 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 MOSP00540 346 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 IFNA17P01571 189 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 BRS3P32247 399 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 PAX9P55771 341 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 OR2B8PP59922 312 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 HSPE1P61604 102 aaKnown RBP14.24□□□□□ -0.13
CLIP1-215ENST00000541108 RPL23AP62750 156 aaKnown RBP14.24□□□□□ -0.13
CLIP1-215ENST00000541108 OPCMLQ14982 345 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 CYB5R2Q6BCY4 276 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 THNSL2Q86YJ6 484 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 OR2T10Q8NGZ9 312 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 C17orf50Q8WW18 174 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 RBMXL1Q96E39 390 aaKnown RBP14.24□□□□□ -0.13
CLIP1-215ENST00000541108 RBKSQ9H477 322 aa14.24□□□□□ -0.13
CLIP1-215ENST00000541108 MSGN1A6NI15 193 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 KCNAB3O43448 404 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 TSC22D2O75157 780 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 TMEM50AO95807 157 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 OR5B3Q8NH48 314 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 SLC25A31Q9H0C2 315 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 AVPP01185 164 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 IGKV1D-33P01593 117 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 IGKV1-33P01594 117 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 CRYGBP07316 175 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 CAV2P51636 162 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 RPL8P62917 257 aaKnown RBP14.23□□□□□ -0.13
CLIP1-215ENST00000541108 DTD1Q8TEA8 209 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 EAF1Q96JC9 268 aaPredicted RBP14.23□□□□□ -0.13
CLIP1-215ENST00000541108 MEGF9Q9H1U4 602 aa14.23□□□□□ -0.13
CLIP1-215ENST00000541108 HECTD1Q9ULT8 2610 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 KANTRA0A1W2PQU2 76 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 CEBPZOSA8MTT3 80 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 SLC25A17O43808 307 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 FAM106CPP0CH98 169 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 IGHV4-38-2P0DP08 117 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 PSG5Q15238 335 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 TMEM252Q8N6L7 170 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 NPBQ8NG41 125 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 COMMD5Q9GZQ3 224 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 PSENENQ9NZ42 101 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 NUP50Q9UKX7 468 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 TCF19Q9Y242 345 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 OR51B2Q9Y5P1 312 aa14.22□□□□□ -0.13
CLIP1-215ENST00000541108 CREBBPQ92793 2442 aa14.21□□□□□ -0.13
CLIP1-215ENST00000541108 TAAR5O14804 337 aa14.21□□□□□ -0.13
CLIP1-215ENST00000541108 SNRNP70P08621 437 aaKnown RBP14.21□□□□□ -0.13
CLIP1-215ENST00000541108 DYNLT3P51808 116 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms