RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MGLLQ99685 303 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 DCUN1D5Q9BTE7 237 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 MLXQ9UH92 298 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 FBXL7Q9UJT9 491 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 TPRKBQ9Y3C4 175 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 OR2W1Q9Y3N9 320 aa10.15□□□□□ -0.78
SS18-204ENST00000539244 A0A075B6Q4 140 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 LOC102724200A0A096LPH7 203 aaPredicted RBP10.14□□□□□ -0.79
SS18-204ENST00000539244 METTL21EPA6NDL7 271 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 PDCD5O14737 125 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 RGS10O43665 173 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 NDUFB8O95169 186 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 CTXN2P0C2S0 81 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 TALDO1P37837 337 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 RPL27AP46776 148 aaKnown RBP10.14□□□□□ -0.79
SS18-204ENST00000539244 OR10A3P58181 314 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 ARL6IP1Q15041 203 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 FAM106AQ4KMX7 169 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 OR4A47Q6IF82 309 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 CLEC19AQ6UXS0 136 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 C19orf35Q6ZS72 473 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 VKORC1L1Q8N0U8 176 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 UXS1Q8NBZ7 420 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 OR52B4Q8NGK2 314 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 OR4S2Q8NH73 311 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 FYTTD1Q96QD9 318 aaKnown RBP10.14□□□□□ -0.79
SS18-204ENST00000539244 OR2A7Q96R45 310 aa10.14□□□□□ -0.79
SS18-204ENST00000539244 TRAV25A0A0B4J276 109 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 NUPR2A6NF83 97 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 DHFRP00374 187 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 C8orf88P0DMB2 117 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 HIST1H1BP16401 226 aaKnown RBP10.13□□□□□ -0.79
SS18-204ENST00000539244 CTRB1P17538 263 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 PSMB6P28072 239 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 BRWD1-AS2P59051 145 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 TNFRSF9Q07011 255 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 CTRB2Q6GPI1 263 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 PRSS48Q7RTY5 328 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 MARC2Q969Z3 335 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 EEF1AKMT3Q96AZ1 226 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 HSD17B10Q99714 261 aaKnown RBP10.13□□□□□ -0.79
SS18-204ENST00000539244 ST6GALNAC5Q9BVH7 336 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 DCSTAMPQ9H295 470 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 ELF5Q9UKW6 265 aaPredicted RBP10.13□□□□□ -0.79
SS18-204ENST00000539244 TP53TG1Q9Y2A0 90 aa10.13□□□□□ -0.79
SS18-204ENST00000539244 IGLV11-55A0A075B6I3 123 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 TRBV7-1A0A0A6YYK4 115 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 IGKV1D-13A0A0B4J2D9 117 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 DPPA5A6NC42 116 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 IGHV3-23P01764 117 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 IGKV1-13P0DP09 117 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 AREGP15514 252 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 ATF4P18848 351 aaPredicted RBP10.12□□□□□ -0.79
SS18-204ENST00000539244 GALP22466 123 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 NFYAP23511 347 aaPredicted RBP10.12□□□□□ -0.79
SS18-204ENST00000539244 TM4SF20Q53R12 229 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 OR2B11Q5JQS5 317 aa10.12□□□□□ -0.79
SS18-204ENST00000539244 ZNF320A2RRD8 509 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 J3QRK9 145 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 SCAF4O95104 1147 aaKnown RBP10.11□□□□□ -0.79
SS18-204ENST00000539244 LY6G6CO95867 125 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 CRHBPP24387 322 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 ELLP55199 621 aaPredicted RBP10.11□□□□□ -0.79
SS18-204ENST00000539244 RPL8P62917 257 aaKnown RBP10.11□□□□□ -0.79
SS18-204ENST00000539244 HACD4Q5VWC8 232 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 CNIH2Q6PI25 160 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 BTNL8Q6UX41 500 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 ZNF66Q6ZN08 573 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 Q6ZWC4 215 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 CXorf58Q96LI9 332 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 MRPL27Q9P0M9 148 aaKnown RBP10.11□□□□□ -0.79
SS18-204ENST00000539244 SELENOKQ9Y6D0 94 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 S4R3C0 116 aa10.11□□□□□ -0.79
SS18-204ENST00000539244 A0A0J9YWU9 116 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 CXorf65A6NEN9 183 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 CGB1A6NKQ9 187 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 HRASP01112 189 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 RAB3BP20337 219 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 MYL9P24844 172 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 BMI1P35226 326 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 EWSR1Q01844 656 aaKnown RBP eCLIP10.1□□□□□ -0.79
SS18-204ENST00000539244 TBCEQ15813 527 aaPredicted RBP10.1□□□□□ -0.79
SS18-204ENST00000539244 CDNFQ49AH0 187 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 CEMP1Q6PRD7 247 aaPredicted RBP10.1□□□□□ -0.79
SS18-204ENST00000539244 UNQ9165/PRO28630Q6UXU0 137 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 NR2C2APQ86WQ0 139 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 MFSD4AQ8N468 514 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 OR1L6Q8NGR2 347 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 OR4A5Q8NH83 315 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 TCTEX1D2Q8WW35 142 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 SPAG8Q99932 426 aaPredicted RBP10.1□□□□□ -0.79
SS18-204ENST00000539244 KRTAP17-1Q9BYP8 105 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 CCDC90BQ9GZT6 254 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 ATG5Q9H1Y0 275 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 NDUFB11Q9NX14 153 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 BET1LQ9NYM9 111 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 SPATA2Q9UM82 520 aa10.1□□□□□ -0.79
SS18-204ENST00000539244 TRDV1A0A1B0GX56 115 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 MFSD2BA6NFX1 497 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 CLEC3BP05452 202 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms