RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ZNF729A6NN14 1252 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-208ENST00000537004 ITGB1BP1O14713 200 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 SLC31A2O15432 143 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 MED6O75586 246 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 FCN3O75636 299 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 DUTP33316 252 aaKnown RBP9.72□□□□□ -0.85
CLIP1-208ENST00000537004 RAB7AP51149 207 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 GNB2P62879 340 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 RPL39P5Q59GN2 51 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 NCR3LG1Q68D85 454 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 ATRAIDQ6UW56 229 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 ZNF841Q6ZN19 808 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 LINC00469Q8N7U9 141 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 OR5C1Q8NGR4 320 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 CORO2AQ92828 525 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 LEAP2Q969E1 77 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 ABHD14AQ9BUJ0 271 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 LINC00574Q9H8X3 128 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 MIOXQ9UGB7 285 aa9.72□□□□□ -0.85
CLIP1-208ENST00000537004 hADV38S2A0JD32 116 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 FAM90A26D6RGX4 464 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 H3BP45 60 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 H7C2Y5 167 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 M0R1X1 148 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 SEC11BP0C7V7 166 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 SPP1P10451 314 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 NFYBP25208 207 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 DYNLT3P51808 116 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 PAX2Q02962 417 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 ZNF266Q14584 549 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 TMEM217Q8N7C4 229 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 HSD17B11Q8NBQ5 300 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 OR8B3Q8NGG8 313 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 CD300LFQ8TDQ1 290 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 NEIL1Q96FI4 390 aaPredicted RBP9.71□□□□□ -0.86
CLIP1-208ENST00000537004 OR8B2Q96RD0 313 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 C12orf57Q99622 126 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 IDI2-AS1Q9NZ38 188 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 INSIG2Q9Y5U4 225 aa9.71□□□□□ -0.86
CLIP1-208ENST00000537004 A0A1W2PPE3 182 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 RAB19A4D1S5 217 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 F8W036 122 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 TXNL1O43396 289 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 IAPPP10997 89 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 CT45A1Q5HYN5 189 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 WDR25Q64LD2 544 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 STX12Q86Y82 276 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 CT45A3Q8NHU0 189 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 SH3BGRL3Q9H299 93 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 POLR3KQ9Y2Y1 108 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 LINC00312Q9Y6C7 94 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 ANK2Q01484 3957 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 IGHV3OR16-10A0A075B7F0 116 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 PPIAL4CA0A0B4J2A2 164 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 MARCH11A6NNE9 402 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 C22orf46C9J442 243 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 J3QLI3 93 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 TNFRSF13BO14836 293 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 FCGR3BO75015 233 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 MMP23AO75900 390 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 FSTL3O95633 263 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 GATA3P23771 443 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 SULT1A1P50225 295 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 UBE2KP61086 200 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 RPL31P62899 125 aaKnown RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 BLOC1S1P78537 153 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 TNFRSF9Q07011 255 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 TMEM267Q0VDI3 215 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 TMEM30BQ3MIR4 351 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 MIDNQ504T8 468 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 KLF17Q5JT82 389 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 H2BFWTQ7Z2G1 175 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 TMEM158Q8WZ71 300 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 NKX6-2Q9C056 277 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 HRH4Q9H3N8 390 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-208ENST00000537004 C19orf12Q9NSK7 152 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 PSENENQ9NZ42 101 aa9.7□□□□□ -0.86
CLIP1-208ENST00000537004 SAA2-SAA4A0A096LPE2 208 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 NUDT19A8MXV4 375 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 RAB29O14966 203 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 TCF21O43680 179 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 VENTXO95231 258 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 SAA2P0DJI9 122 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-208ENST00000537004 TAS2R30P59541 319 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 MEF2CQ06413 473 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-208ENST00000537004 PRAMEF5Q5TYX0 476 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 UQCC3Q6UW78 93 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 Q6ZRG5 221 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-208ENST00000537004 ZNF439Q8NDP4 499 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 NANPQ8TBE9 248 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 R3HDM4Q96D70 268 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 PARP11Q9NR21 331 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 HSPB7Q9UBY9 170 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 RPUSD1Q9UJJ7 312 aaKnown RBP9.69□□□□□ -0.86
CLIP1-208ENST00000537004 GAB2Q9UQC2 676 aa9.69□□□□□ -0.86
CLIP1-208ENST00000537004 SOX21Q9Y651 276 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-208ENST00000537004 IGHV2-70DA0A0C4DH43 119 aa9.68□□□□□ -0.86
CLIP1-208ENST00000537004 FAM74A7A6NL05 159 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms