RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 HPRT1P00492 218 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 IGHV3-9P01782 118 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 STAG3L2P0CL84 134 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 STAG3L3P0CL85 134 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 CCL2P13500 99 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 KITLGP21583 273 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 MAGEA5P43359 124 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 RPL15P61313 204 aaKnown RBP5.28□□□□□ -1.56
SYNE1-233ENST00000535896 SELENOTP62341 195 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 RANP62826 216 aaKnown RBP5.28□□□□□ -1.56
SYNE1-233ENST00000535896 PAFAH1B2P68402 229 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 RTL8BQ17RB0 113 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 DEFB109BQ30KR1 87 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 PDZD11Q5EBL8 140 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 ATP1A1-AS1Q5TC04 95 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 WDR86Q86TI4 376 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 MDP1Q86V88 176 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 C17orf78Q8N4C9 275 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-233ENST00000535896 MDS2Q8NDY4 140 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 PPP1R35Q8TAP8 253 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 CORO2AQ92828 525 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 C11orf52Q96A22 123 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 WDYHV1Q96HA8 205 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 ZNF488Q96MN9 340 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 CXXC4Q9H2H0 198 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 OBP2BQ9NPH6 170 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 JPT1Q9UK76 154 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 PXMP4Q9Y6I8 212 aa5.28□□□□□ -1.56
SYNE1-233ENST00000535896 GTF3C1Q12789 2109 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 A0A1W2PPV4 95 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 C15orf62A8K5M9 175 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 PAGE4O60829 102 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 ZG16O60844 167 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 CEACAM4O75871 244 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 S1PR2O95136 353 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 KRASP01116 189 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 HBZP02008 142 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 CRYABP02511 175 aaKnown RBP5.27□□□□□ -1.57
SYNE1-233ENST00000535896 MT-ND6P03923 174 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 SP1P08047 785 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 SFTPCP11686 197 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 AREGP15514 252 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 RAB4AP20338 218 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 GZMHP20718 246 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 IL3RAP26951 378 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 OR10J1P30954 320 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 G6PCP35575 357 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 SRYQ05066 204 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 TBR1Q16650 682 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 CR1LQ2VPA4 569 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 C1orf194Q5T5A4 169 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 SPINK14Q6IE38 97 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 CDPF1Q6NVV7 123 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 ACP7Q6ZNF0 438 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 BATF2Q8N1L9 274 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 Q8N7P7 452 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 FAM169BQ8N8A8 192 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 SFRP2Q96HF1 295 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 PCGF1Q9BSM1 259 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 C19orf24Q9BVV8 132 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 ZDHHC11Q9H8X9 412 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 FUT9Q9Y231 359 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 HCFC1P51610 2035 aa5.27□□□□□ -1.57
SYNE1-233ENST00000535896 RP1L1Q8IWN7 2480 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 ATMQ13315 3056 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 NBEAQ8NFP9 2946 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 PRRC2CQ9Y520 2896 aaKnown RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 A8MXE2 369 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 PRSS46E5RG02 174 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 YPEL1O60688 119 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 RAMP3O60896 148 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 IGKV3-15P01624 115 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 CD55P08174 381 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 OR10J4P0C629 311 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 HOXC12P31275 282 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 CFHR2P36980 270 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 OR3A1P47881 315 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 MEOX1P50221 254 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 TNFSF10P50591 281 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 RAB7AP51149 207 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 FOXG1P55316 489 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 ERVFC1-1P60608 527 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 ERVS71-1P61550 626 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 ERVK-16P61578 105 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 NUTF2P61970 127 aaKnown RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 RHOBP62745 196 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 TFF3Q07654 80 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 RAB31Q13636 194 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 P2RY6Q15077 328 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 IZUMO4Q1ZYL8 232 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 C9orf135Q5VTT2 229 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 Q6ZT83 130 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 BEND4Q6ZU67 534 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 MRPL41Q8IXM3 137 aaKnown RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF664Q8N3J9 261 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 PNKDQ8N490 385 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 PRR18Q8N4B5 295 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM178AQ8NBL3 297 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 OR1L1Q8NH94 360 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms