RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 OR51H1Q8NH63 302 aa11.4□□□□□ -0.58
CPSF1-206ENST00000531480 MARCH1Q8TCQ1 289 aa11.4□□□□□ -0.58
CPSF1-206ENST00000531480 PHB2Q99623 299 aa11.4□□□□□ -0.58
CPSF1-206ENST00000531480 RTBDNQ9BSG5 229 aaPredicted RBP11.4□□□□□ -0.58
CPSF1-206ENST00000531480 OR51J1Q9H342 316 aa11.4□□□□□ -0.58
CPSF1-206ENST00000531480 TPSG1Q9NRR2 321 aa11.4□□□□□ -0.58
CPSF1-206ENST00000531480 TEX13DA0A0J9YY54 714 aaPredicted RBP11.39□□□□□ -0.59
CPSF1-206ENST00000531480 MPPED1O15442 326 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 SNAPC5O75971 98 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 FGF2P09038 288 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 SAA1P0DJI8 122 aaPredicted RBP11.39□□□□□ -0.59
CPSF1-206ENST00000531480 BCAP31P51572 246 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 CX3CL1P78423 397 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 NDPQ00604 133 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 VMA21Q3ZAQ7 101 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 PHLDA2Q53GA4 152 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 C19orf54Q5BKX5 351 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 OR2B11Q5JQS5 317 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 C9orf152Q5JTZ5 239 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 SHISA2Q6UWI4 295 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 TBC1D26Q86UD7 250 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 FOXRED2Q8IWF2 684 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 STPG2Q8N412 459 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 C3orf56Q8N813 242 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 COQ8AQ8NI60 647 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 C5orf66Q9H5L9 145 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 COMMD9Q9P000 198 aa11.39□□□□□ -0.59
CPSF1-206ENST00000531480 HMX3A6NHT5 357 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 ATG12O94817 140 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 HRASP01112 189 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 OR4E1P0C645 316 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 EGR2P11161 476 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-206ENST00000531480 SPNP16150 400 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 AKR1C4P17516 323 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 PIGPP57054 158 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 PRSS8Q16651 343 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 VSTM2AQ8TAG5 236 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 ZNF431Q8TF32 576 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-206ENST00000531480 RHOVQ96L33 236 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 NOL4LQ96MY1 436 aaPredicted RBP11.38□□□□□ -0.59
CPSF1-206ENST00000531480 AIFM2Q9BRQ8 373 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 BET1LQ9NYM9 111 aa11.38□□□□□ -0.59
CPSF1-206ENST00000531480 hCG_2014768A0A024R1R8 64 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 A0A0B4J2A0 478 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 C7orf66A4D0T2 115 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 H0Y980 276 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 ATP6V0E1O15342 81 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 KBTBD11O94819 623 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 S1PR2O95136 353 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 CA2P00918 260 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 NQO2P16083 231 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 PI3P19957 117 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 PPIFP30405 207 aaKnown RBP11.37□□□□□ -0.59
CPSF1-206ENST00000531480 DHODHQ02127 395 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 PJVKQ0ZLH3 352 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 ARSJQ5FYB0 599 aaPredicted RBP11.37□□□□□ -0.59
CPSF1-206ENST00000531480 RNF152Q8N8N0 203 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 TMEM167AQ8TBQ9 72 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 CHAC2Q8WUX2 184 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 SHPKQ9UHJ6 478 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 VSIG4Q9Y279 399 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 FBXO7Q9Y3I1 522 aa11.37□□□□□ -0.59
CPSF1-206ENST00000531480 VWFP04275 2813 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 OR2A4O95047 310 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 DUS4LO95620 317 aaKnown RBP11.36□□□□□ -0.59
CPSF1-206ENST00000531480 IFNA21P01568 189 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 IGKV1-39P01597 117 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 HLA-AP01891 365 aaKnown RBP11.36□□□□□ -0.59
CPSF1-206ENST00000531480 IGKV1D-39P04432 117 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 RPA2P15927 270 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 VAMP1P23763 118 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 CD83Q01151 205 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 SRSF4Q08170 494 aaKnown RBP11.36□□□□□ -0.59
CPSF1-206ENST00000531480 PLGLAQ15195 96 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 TCTEX1D4Q5JR98 221 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 LYG2Q86SG7 212 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 VKORC1L1Q8N0U8 176 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 OR4A5Q8NH83 315 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 SGMS2Q8NHU3 365 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 TMEM230Q96A57 120 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 OR2A7Q96R45 310 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 GON7Q9BXV9 100 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 ZNF430Q9H8G1 570 aaPredicted RBP11.36□□□□□ -0.59
CPSF1-206ENST00000531480 ALG5Q9Y673 324 aa11.36□□□□□ -0.59
CPSF1-206ENST00000531480 C3orf85A0A1B0GTC6 90 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 PSMB11A5LHX3 300 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 CRYM-AS1A6NIL9 109 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 MARCH11A6NNE9 402 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 IGHG4P01861 327 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 ANXA7P20073 488 aaKnown RBP11.35□□□□□ -0.59
CPSF1-206ENST00000531480 UCP1P25874 307 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 MAS1LP35410 378 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 LPAR6P43657 344 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 RRAS2P62070 204 aaPredicted RBP11.35□□□□□ -0.59
CPSF1-206ENST00000531480 AKIRIN2Q53H80 203 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 OR4A47Q6IF82 309 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 C10orf99Q6UWK7 81 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 CENPVQ7Z7K6 275 aaPredicted RBP11.35□□□□□ -0.59
CPSF1-206ENST00000531480 AKAP14Q86UN6 197 aa11.35□□□□□ -0.59
CPSF1-206ENST00000531480 MMD2Q8IY49 270 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms