RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 GNA13Q14344 377 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 ZNF181Q2M3W8 571 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 SLC36A2Q495M3 483 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 RBM48Q5RL73 367 aaKnown RBP1.45□□□□□ -2.18
CD44-233ENST00000531141 XKRXQ6PP77 449 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 MRPL52Q86TS9 123 aaKnown RBP1.45□□□□□ -2.18
CD44-233ENST00000531141 ATPAF2Q8N5M1 289 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 CDRT4Q8N9R6 151 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 ACBD4Q8NC06 268 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 WFDC11Q8NEX6 87 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 OR8J2Q8NGG1 315 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 OR4C6Q8NH72 309 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 SGMS2Q8NHU3 365 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 CCDC127Q96BQ5 260 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 HBEGFQ99075 208 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 VAT1Q99536 393 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 UTP23Q9BRU9 249 aaKnown RBP1.45□□□□□ -2.18
CD44-233ENST00000531141 COPS4Q9BT78 406 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 NXF2Q9GZY0 626 aaKnown RBP1.45□□□□□ -2.18
CD44-233ENST00000531141 LRTM1Q9HBL6 345 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 IMP3Q9NV31 184 aaKnown RBP1.45□□□□□ -2.18
CD44-233ENST00000531141 C1orf109Q9NX04 203 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 SDHAF2Q9NX18 166 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 OR5V1Q9UGF6 321 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 NXT1Q9UKK6 140 aaKnown RBP1.45□□□□□ -2.18
CD44-233ENST00000531141 TENM3Q9P273 2699 aa1.45□□□□□ -2.18
CD44-233ENST00000531141 CHD3Q12873 2000 aaKnown RBP1.45□□□□□ -2.18
CD44-233ENST00000531141 ZANQ9Y493 2812 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 NUP210Q8TEM1 1887 aaPredicted RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 A0A1W2PRG6 482 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 GOLGA8IPA6NC78 632 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 A6NED7 52 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 FABP12A6NFH5 140 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 KLRC4-KLRK1H3BQV0 150 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 C19orf84I3L1E1 186 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 I3L4J1 428 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 K7EN84 100 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 hCG_2039718K7EN88 272 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 CRXO43186 299 aaPredicted RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 SGCEO43556 437 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 ATP5HO75947 161 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 RPP14O95059 124 aaKnown RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 BRI3O95415 125 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 GPR75O95800 540 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 PET100P0DJ07 73 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 SYT1P21579 422 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 XKP51811 444 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 CEBPGP53567 150 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 C2orf80Q0P641 193 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 GOLGA7BQ2TAP0 167 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 TMEM249Q2WGJ8 235 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 BSXQ3C1V8 233 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 PYCR3Q53H96 274 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 ACTBL2Q562R1 376 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 CDKL4Q5MAI5 379 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 MTERF4Q7Z6M4 381 aaKnown RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 HS3ST5Q8IZT8 346 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 ST6GALNAC3Q8NDV1 305 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 IFT81Q8WYA0 676 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 PPWD1Q96BP3 646 aaKnown RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 FMC1Q96HJ9 113 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 BIRC8Q96P09 236 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 DCUN1D5Q9BTE7 237 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 ZNF426Q9BUY5 554 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 POTEKPQ9BYX7 375 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 ZNF436Q9C0F3 470 aaPredicted RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 DERL2Q9GZP9 239 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 OR2D2Q9H210 308 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 VCX3BQ9H321 246 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 MRPL40Q9NQ50 206 aaKnown RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 SPANXB1Q9NS25 103 aaPredicted RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 MRPL16Q9NX20 251 aaKnown RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 CYB5R1Q9UHQ9 305 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 TNRC6AQ8NDV7 1962 aaKnown RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 UNC13CQ8NB66 2214 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 PLIN4Q96Q06 1357 aa1.44□□□□□ -2.18
CD44-233ENST00000531141 INTS1Q8N201 2190 aaKnown RBP1.44□□□□□ -2.18
CD44-233ENST00000531141 CACNA1CQ13936 2221 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 TRRAPQ9Y4A5 3859 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 MYH6P13533 1939 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 IGHV1-45A0A0A0MS14 117 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 A0A1B0GXF2 115 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 SLC16A4O15374 487 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 TNFAIP8O95379 198 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 DEXIO95424 95 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 APOEP02649 317 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 GIMD1P0DJR0 217 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 MAGEA6P43360 314 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 GCLMP48507 274 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 CDC34P49427 236 aaPredicted RBP1.43□□□□□ -2.18
CD44-233ENST00000531141 RPL14P50914 215 aaKnown RBP1.43□□□□□ -2.18
CD44-233ENST00000531141 KRTAP12-1P59990 96 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 STX5Q13190 355 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 ITGB3BPQ13352 177 aaPredicted RBP1.43□□□□□ -2.18
CD44-233ENST00000531141 FLOT2Q14254 428 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 CASP8Q14790 479 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 GUSBP1Q15486 140 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 EXOC3L4Q17RC7 722 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 AKIRIN2Q53H80 203 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 COQ5Q5HYK3 327 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms