RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 RASL11BQ9BPW5 248 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 GPN1Q9HCN4 374 aaPredicted RBP12.92□□□□□ -0.34
LSM1-204ENST00000522515 TRAV3A0A0B4J244 114 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 M0QZK8 103 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 IL6RP08887 468 aaPredicted RBP12.91□□□□□ -0.34
LSM1-204ENST00000522515 PJVKQ0ZLH3 352 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 IZUMO4Q1ZYL8 232 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 PPP1R27Q86WC6 154 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 VSTM2AQ8TAG5 236 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 PHB2Q99623 299 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 BET1LQ9NYM9 111 aa12.91□□□□□ -0.34
LSM1-204ENST00000522515 A0A0B4J2A0 478 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 CREBL2O60519 120 aaPredicted RBP12.9□□□□□ -0.34
LSM1-204ENST00000522515 ATG12O94817 140 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 KBTBD11O94819 623 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 OR9G9P0C7N8 305 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 P0C879 139 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 Q6ZS46 218 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 H2BFWTQ7Z2G1 175 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 C12orf45Q8N5I9 185 aaPredicted RBP12.9□□□□□ -0.34
LSM1-204ENST00000522515 TMEM167AQ8TBQ9 72 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 TAF15Q92804 592 aaKnown RBP eCLIP12.9□□□□□ -0.34
LSM1-204ENST00000522515 RRNAD1Q96FB5 475 aaKnown RBP12.9□□□□□ -0.34
LSM1-204ENST00000522515 RANBP3Q9H6Z4 567 aaPredicted RBP12.9□□□□□ -0.34
LSM1-204ENST00000522515 ZNF430Q9H8G1 570 aaPredicted RBP12.9□□□□□ -0.34
LSM1-204ENST00000522515 SHPKQ9UHJ6 478 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 MMP24Q9Y5R2 645 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 ALG5Q9Y673 324 aa12.9□□□□□ -0.34
LSM1-204ENST00000522515 C7orf66A4D0T2 115 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 SNRPGP15A8MWD9 76 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 TRIM77I1YAP6 450 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 UPK2O00526 184 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 ADAP1O75689 374 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 HLA-DRB1P01911 266 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 HOXB5P09067 269 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 VDAC1P21796 283 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 PRSS8Q16651 343 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 CADM3Q8N126 398 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 UXS1Q8NBZ7 420 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 RNASE11Q8TAA1 199 aaKnown RBP12.9□□□□□ -0.35
LSM1-204ENST00000522515 NSG2Q9Y328 171 aa12.9□□□□□ -0.35
LSM1-204ENST00000522515 DUXBA0A1W2PPF3 345 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 DBX1A6NMT0 343 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 CA2P00918 260 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 SSBP2P81877 361 aaPredicted RBP12.89□□□□□ -0.35
LSM1-204ENST00000522515 NMSQ5H8A3 153 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 C9orf152Q5JTZ5 239 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 Q6ZRM9 215 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 LSM10Q969L4 123 aaKnown RBP12.89□□□□□ -0.35
LSM1-204ENST00000522515 GPR146Q96CH1 333 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 HSPB9Q9BQS6 159 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 NPFFR1Q9GZQ6 430 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 NF1P21359 2839 aa12.89□□□□□ -0.35
LSM1-204ENST00000522515 RPL15P61313 204 aaKnown RBP12.88□□□□□ -0.35
LSM1-204ENST00000522515 RELBQ01201 579 aa12.88□□□□□ -0.35
LSM1-204ENST00000522515 PRIMA1Q86XR5 153 aa12.88□□□□□ -0.35
LSM1-204ENST00000522515 FAM219AQ8IW50 185 aa12.88□□□□□ -0.35
LSM1-204ENST00000522515 MMD2Q8IY49 270 aa12.88□□□□□ -0.35
LSM1-204ENST00000522515 OR4A5Q8NH83 315 aa12.88□□□□□ -0.35
LSM1-204ENST00000522515 TMED3Q9Y3Q3 217 aa12.88□□□□□ -0.35
LSM1-204ENST00000522515 SETD2Q9BYW2 2564 aaPredicted RBP12.88□□□□□ -0.35
LSM1-204ENST00000522515 IGHV7-81A0A0B4J1V7 117 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 PIGBOS1A0A0B4J2F0 54 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 LINC01548A6NM66 108 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 MPTX1A8MV57 137 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 CRYBA1P05813 215 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 MYOD1P15172 320 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 OR2B8PP59922 312 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 GNB1P62873 340 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 RPL8P62917 257 aaKnown RBP12.87□□□□□ -0.35
LSM1-204ENST00000522515 CX3CL1P78423 397 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 TNXAQ16473 311 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 GGNBP1Q5YKI7 109 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 PRSS22Q9GZN4 317 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 OR51J1Q9H342 316 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 ZNF702PQ9H963 129 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 JMJD1CQ15652 2540 aa12.87□□□□□ -0.35
LSM1-204ENST00000522515 CCSO14618 274 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 SNAPC5O75971 98 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 NDPQ00604 133 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 C2orf68Q2NKX9 166 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 C10orf55Q5SWW7 151 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 ZNF562Q6V9R5 426 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 Q6ZSV7 163 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 OR4A16Q8NH70 328 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 CACNG5Q9UF02 275 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 PLXNB1O43157 2135 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 C15orf61A6NNL5 157 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 SSNA1O43805 119 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 IGHG2P01859 326 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 OPN1MWP04001 364 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 OPN1MW2P0DN77 364 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 OPN1MW3P0DN78 364 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 HLA-GP17693 338 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 TMEM14BQ9NUH8 114 aa12.86□□□□□ -0.35
LSM1-204ENST00000522515 TNCP24821 2201 aa12.85□□□□□ -0.35
LSM1-204ENST00000522515 E7EUB6 86 aa12.85□□□□□ -0.35
LSM1-204ENST00000522515 RBMXL2O75526 392 aaKnown RBP12.85□□□□□ -0.35
LSM1-204ENST00000522515 ACTL6BO94805 426 aa12.85□□□□□ -0.35
LSM1-204ENST00000522515 CNIH1O95406 144 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms