RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 RNF152Q8N8N0 203 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 MINDY2Q8NBR6 621 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 OR13C8Q8NGS7 320 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 TMEM167AQ8TBQ9 72 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 MARCH1Q8TCQ1 289 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 HRASLSQ9HDD0 168 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 PTTG2Q9NZH5 202 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 WSB1Q9Y6I7 421 aa11.2□□□□□ -0.62
NUP54-216ENST00000514901 G3V318 75 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 ARPC1BO15143 372 aaKnown RBP11.19□□□□□ -0.62
NUP54-216ENST00000514901 KBTBD11O94819 623 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 SERPINE2P07093 398 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 FGF2P09038 288 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 RPA2P15927 270 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 CD40LGP29965 261 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 SLC6A1P30531 599 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 ZNF585BQ52M93 769 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 ZNF57Q68EA5 555 aaPredicted RBP11.19□□□□□ -0.62
NUP54-216ENST00000514901 TMEM65Q6PI78 240 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 UNQ5815/PRO19632Q6UWF5 114 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 C10orf99Q6UWK7 81 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 VKORC1L1Q8N0U8 176 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 DMBX1Q8NFW5 382 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 OR5M8Q8NGP6 311 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 GRPEL2Q8TAA5 225 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 S100ZQ8WXG8 99 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 R3HDM4Q96D70 268 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 ZNF430Q9H8G1 570 aaPredicted RBP11.19□□□□□ -0.62
NUP54-216ENST00000514901 GPR132Q9UNW8 380 aa11.19□□□□□ -0.62
NUP54-216ENST00000514901 FOXA2Q9Y261 457 aaPredicted RBP11.19□□□□□ -0.62
NUP54-216ENST00000514901 H0Y980 276 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 S1PR2O95136 353 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 PI3P19957 117 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 TNXAQ16473 311 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 BAK1Q16611 211 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 ECSCRQ19T08 205 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 MRGPRG-AS1Q2M3A8 158 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 NSUN5P1Q3KNT7 163 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 C19orf54Q5BKX5 351 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 OR4A47Q6IF82 309 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 SSX9Q7RTT3 188 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 LFNGQ8NES3 379 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 OR4F17Q8NGA8 305 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 MRGPRFQ96AM1 343 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 OR4F4Q96R69 305 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 SPIN2AQ99865 258 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 SPIN2BQ9BPZ2 258 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 FBXO7Q9Y3I1 522 aa11.18□□□□□ -0.62
NUP54-216ENST00000514901 MGAM2Q2M2H8 2515 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 C3orf85A0A1B0GTC6 90 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 NAP1L6A6NFF2 107 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 MARCH11A6NNE9 402 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 CENPXA8MT69 81 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 ATG12O94817 140 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 IGLV1-40P01703 118 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 IL6RP08887 468 aaPredicted RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 PSMB8P28062 276 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 RPL23AP62750 156 aaKnown RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 RPL8P62917 257 aaKnown RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 SSBP2P81877 361 aaPredicted RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 KHDC1LQ5JSQ8 128 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 SRSF12Q8WXF0 261 aaKnown RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 SDHCQ99643 169 aaPredicted RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 SLC25A21Q9BQT8 299 aaPredicted RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 RTBDNQ9BSG5 229 aaPredicted RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 FAM103A1Q9BTL3 118 aaKnown RBP11.17□□□□□ -0.62
NUP54-216ENST00000514901 C5orf66Q9H5L9 145 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 AKIP1Q9NQ31 210 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 TMEM140Q9NV12 185 aa11.17□□□□□ -0.62
NUP54-216ENST00000514901 TEX13DA0A0J9YY54 714 aaPredicted RBP11.16□□□□□ -0.62
NUP54-216ENST00000514901 A0A1W2PN81 502 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 MSGN1A6NI15 193 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 ADARB2-AS1A8MUL3 147 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 H3BUA1 57 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 UPK2O00526 184 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 KRASP01116 189 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 HLA-GP17693 338 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 CHRNA7P36544 502 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 CDX1P47902 265 aaPredicted RBP11.16□□□□□ -0.62
NUP54-216ENST00000514901 TSC22D3Q99576 134 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 PHB2Q99623 299 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 C7orf50Q9BRJ6 194 aaKnown RBP11.16□□□□□ -0.62
NUP54-216ENST00000514901 CCDC32Q9BV29 185 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 KCNIP3Q9Y2W7 256 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 VWFP04275 2813 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 PKD1L1Q8TDX9 2849 aa11.16□□□□□ -0.62
NUP54-216ENST00000514901 SNAPC5O75971 98 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 BRI3O95415 125 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 RPLP1P05386 114 aaKnown RBP11.15□□□□□ -0.62
NUP54-216ENST00000514901 PF4V1P10720 104 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 IL7P13232 177 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 RPL27AP46776 148 aaKnown RBP11.15□□□□□ -0.62
NUP54-216ENST00000514901 RAB9AP51151 201 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 DHODHQ02127 395 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 SLC25A42Q86VD7 318 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 SGPP2Q8IWX5 399 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 SLA2Q9H6Q3 261 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 NAA60Q9H7X0 242 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 FKBP11Q9NYL4 201 aa11.15□□□□□ -0.62
NUP54-216ENST00000514901 CMYA5Q8N3K9 4069 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms