RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 IGKV1-27A0A075B6S5 117 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 IGKV1-12A0A0C4DH73 117 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 ANKRD30BLA7E2S9 258 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 IGKV1D-12P01611 117 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 FABP2P12104 132 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 CCL1P22362 96 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 CAMPP49913 170 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 TMEM52BQ4KMG9 183 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 CCL4L1Q8NHW4 92 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 SSBP3Q9BWW4 388 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 B4GALT7Q9UBV7 327 aa10.11□□□□□ -0.79
LIMCH1-213ENST00000511496 SHISA8B8ZZ34 492 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 CEACAM5P06731 702 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 TCTEX1D4Q5JR98 221 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 TPRX1Q8N7U7 411 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 TMEM116Q8NCL8 245 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 LINC00470Q9BZP3 86 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 FAM110CQ1W6H9 321 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 PQLC2Q6ZP29 291 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 IL1F10Q8WWZ1 152 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 SRSF8Q9BRL6 282 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 OR1A1Q9P1Q5 309 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 RP1P56715 2156 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 A0A1W2PPM0 123 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 LEPROTL1O95214 131 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 IGKV1-39P01597 117 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 IGKV1-5P01602 117 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 IGKV1D-39P04432 117 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 ZXDAP98168 799 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 TM4SF20Q53R12 229 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 TMEM211Q6ICI0 200 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 ELSPBP1Q96BH3 223 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 MTCH1Q9NZJ7 389 aa10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 YTHDF2Q9Y5A9 579 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-213ENST00000511496 ADAMTS9Q9P2N4 1935 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 A0A1B0GW15 77 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 RNF183Q96D59 192 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 TIMM29Q9BSF4 260 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 KNTC1P50748 2209 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 CCL16O15467 120 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 GNG4P50150 75 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 MFAP2P55001 183 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 FOXA3P55318 350 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 PLCXD2Q0VAA5 305 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 C2orf91Q6ZV80 131 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 SH2D6Q7Z4S9 175 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 FER1L6-AS2Q96M78 137 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 PSG8Q9UQ74 426 aa10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 MKI67P46013 3256 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-213ENST00000511496 KLRC4-KLRK1H3BQV0 150 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 CCNOP22674 350 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 CEACAM16Q2WEN9 425 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 ZNF257Q9Y2Q1 563 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 RRHO14718 337 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 HBZP02008 142 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 PPP1CAP62136 330 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 OR8B8Q15620 311 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 HNRNPA1L2Q32P51 320 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 CENPWQ5EE01 88 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 TMEM14EPQ6UXP3 125 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 TCEAL8Q8IYN2 117 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 UBALD1Q8TB05 177 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 SAP30LQ9HAJ7 183 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 SCN10AQ9Y5Y9 1956 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 CD24P25063 80 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 WFDC2Q14508 124 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 KIR2DS3Q14952 304 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 HIF1ANQ9NWT6 349 aa10.08□□□□□ -0.8
LIMCH1-213ENST00000511496 TRBV7-9A0A0J9YWB2 115 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 B5MCH6 92 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 ODF1Q14990 250 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 RNPS1Q15287 305 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 TRIP6Q15654 476 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 ETDBQ3ZM63 59 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 FA2HQ7L5A8 372 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 MTURNQ8N3F0 131 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 SPEM1Q8N4L4 309 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 SMIM20Q8N5G0 67 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 SPSB4Q96A44 273 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 R4GN57 208 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 CA3P07451 260 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 GRB2P62993 217 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 COX19Q49B96 90 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 NHLRC2Q8NBF2 726 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 FLVCR1-AS1Q8TAF5 88 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 FGF22Q9HCT0 170 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 IL36RNQ9UBH0 155 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 HELTA6NFD8 242 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 TMEM92Q6UXU6 159 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 BOD1L2Q8IYS8 172 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 PATE1Q8WXA2 126 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 SPAG8Q99932 426 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 MRPL16Q9NX20 251 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 RABAC1Q9UI14 185 aa10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 BOKQ9UMX3 212 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-213ENST00000511496 IGKV1-6A0A0C4DH72 117 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 TSPAN13O95857 204 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 SAMD5Q5TGI4 173 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 ZDHHC16Q969W1 377 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 GCM1Q9NP62 436 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms