RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ASCL2Q99929 193 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 MESP1Q9BRJ9 268 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 MED20Q9H944 212 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 F11RQ9Y624 299 aaKnown RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 CACNA1FO60840 1977 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 ARAP2Q8WZ64 1704 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 A0A0U1RQS6 177 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 A0A1W2PPM0 123 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 hADV29S1A0JD25 119 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 FRG2CA6NGY1 282 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 SHISA7A6NL88 538 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 H7C2G1 150 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 J3QW42 95 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 K7EQS6 105 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 CLDN14O95500 239 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 TCRAP04437 139 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 HOXB2P14652 356 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 SELPP16109 830 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 PRTN3P24158 256 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 CFPP27918 469 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 HLA-DMBP28068 263 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 PTGDSP41222 190 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 RPL31P62899 125 aaKnown RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 PITX1P78337 314 aaPredicted RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 NRN1LQ496H8 165 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 C6orf132Q5T0Z8 1188 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 C8orf82Q6P1X6 216 aaPredicted RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 FAM214BQ7L5A3 538 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 CLDN19Q8N6F1 224 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 SSMEM1Q8WWF3 244 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 CACNG8Q8WXS5 425 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 ARHGAP5-AS1Q96IT6 56 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 PROCRQ9UNN8 238 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 MYH10P35580 1976 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 H0YIG0 161 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 H3BNC9 293 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 SS18L1O75177 396 aaPredicted RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 EPPINO95925 133 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 CELA2BP08218 269 aaPredicted RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 PDE6GP18545 87 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 GCHFRP30047 84 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 CD68P34810 354 aaPredicted RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 EMDP50402 254 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 SSR4P51571 173 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 HIST1H4AP62805 103 aaKnown RBP3.07□□□□□ -1.92
USP53-205ENST00000509769 OXLD1Q5BKU9 147 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 PRSS36Q5K4E3 855 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 TXNRD3NBQ6F5E7 133 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 CCDC144NLQ6NUI1 221 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 WDR82Q6UXN9 313 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 Q6ZSR6 202 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 GTSCR1Q86UQ5 136 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 SFTPA2Q8IWL1 248 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 SFTPA1Q8IWL2 248 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 TMEM178AQ8NBL3 297 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 FGF11Q92914 225 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 IFI27L1Q96BM0 104 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 TMEM243Q9BU79 118 aa3.07□□□□□ -1.92
USP53-205ENST00000509769 COL11A1P12107 1806 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 A0A0A6YYC8 382 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 TRAV8-6A0A0B4J262 113 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 TRBV5-5A0A0J9YX44 114 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 H0YIZ8 118 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 I3L1I5 382 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 SPINK4O60575 86 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 CRPP02741 224 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 THBDP07204 575 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 MGPP08493 103 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 LY6KQ17RY6 165 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 TREML2Q5T2D2 321 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 Q6ZVH6 145 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 OR51G1Q8NGK1 321 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 TSKUQ8WUA8 353 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 MRGPRFQ96AM1 343 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 FOXC2Q99958 501 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 SF3B5Q9BWJ5 86 aaKnown RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 IFI27L2Q9H2X8 130 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 AJAP1Q9UKB5 411 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 LRP12Q9Y561 859 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 INSIG2Q9Y5U4 225 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 TRBV6-7A0A0A0MS04 114 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 A0A0B4J2C4 111 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 A0A0B4J2E0 115 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 A0A1B0GX12 115 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 B5MCH6 92 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 MOSP00540 346 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 IGHG2P01859 326 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 IGFBP3P17936 291 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 CTGFP29279 349 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 IFI27P40305 119 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 GFERP55789 205 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 RPL23P62829 140 aaKnown RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 RPL11P62913 178 aaKnown RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 IL11RAQ14626 422 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 DUX4L9Q6RFH8 374 aaPredicted RBP3.06□□□□□ -1.92
USP53-205ENST00000509769 KREMEN2Q8NCW0 462 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 NUP35Q8NFH5 326 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 RASL10AQ92737 203 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 NAT6Q93015 286 aa3.06□□□□□ -1.92
USP53-205ENST00000509769 EEF1AKMT3Q96AZ1 226 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms