RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 FHITP49789 147 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 CEBPGP53567 150 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 LINC00205P59089 165 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 VAMP2P63027 116 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 DHRS2Q13268 280 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 PPP1R1AQ13522 171 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 EBI3Q14213 229 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 TMEM187Q14656 261 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 ZNF585BQ52M93 769 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 FAM120AOSQ5T036 256 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 RUSC1-AS1Q66K80 236 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 DHRS7BQ6IAN0 325 aaPredicted RBP5.8□□□□□ -1.48
NUP54-204ENST00000506098 BRD3OSQ6XYD6 125 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 SMIM15Q7Z3B0 74 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 THNSL2Q86YJ6 484 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 PDPNQ86YL7 162 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 LRTM2Q8N967 370 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 CD300LFQ8TDQ1 290 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 SFT2D1Q8WV19 159 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 RAB24Q969Q5 203 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 RRNAD1Q96FB5 475 aaKnown RBP5.8□□□□□ -1.48
NUP54-204ENST00000506098 TMEM56Q96MV1 263 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 GPHA2Q96T91 129 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 MRPL20Q9BYC9 149 aaKnown RBP5.8□□□□□ -1.48
NUP54-204ENST00000506098 TMEM222Q9H0R3 208 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 YAE1D1Q9NRH1 226 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 LIN7CQ9NUP9 197 aaKnown RBP5.8□□□□□ -1.48
NUP54-204ENST00000506098 MLXQ9UH92 298 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 SHPKQ9UHJ6 478 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 HILPDAQ9Y5L2 63 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 PUS1Q9Y606 427 aaKnown RBP eCLIP5.8□□□□□ -1.48
NUP54-204ENST00000506098 TMEM56-RWDD3S4R434 201 aa5.8□□□□□ -1.48
NUP54-204ENST00000506098 IGHV3OR16-10A0A075B7F0 116 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 PIGBOS1A0A0B4J2F0 54 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 A0A0U1RQK1 487 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 A0A1W2PPQ1 181 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 HPRT1P00492 218 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 HLA-AP01891 365 aaKnown RBP5.79□□□□□ -1.48
NUP54-204ENST00000506098 APOA2P02652 100 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 ANXA3P12429 323 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 C4BPBP20851 252 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 BRS3P32247 399 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 REG1BP48304 166 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 BTN1A1Q13410 526 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 POU2AF1Q16633 256 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 TATDN3Q17R31 274 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 ANKRD55Q3KP44 614 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 TMEM177Q53S58 311 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 LIAT1Q6ZQX7 453 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 MRPL52Q86TS9 123 aaKnown RBP5.79□□□□□ -1.48
NUP54-204ENST00000506098 COMMD7Q86VX2 200 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 STPG2Q8N412 459 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 OR4C13Q8NGP0 309 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 OR51H1Q8NH63 302 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 ZNF431Q8TF32 576 aaPredicted RBP5.79□□□□□ -1.48
NUP54-204ENST00000506098 MITD1Q8WV92 249 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 TCTEX1D2Q8WW35 142 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 IL22RA2Q969J5 263 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 RNF5Q99942 180 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 SMR3AQ99954 134 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 BEX2Q9BXY8 128 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 MS4A7Q9GZW8 240 aaPredicted RBP5.79□□□□□ -1.48
NUP54-204ENST00000506098 PLEKHA2Q9HB19 425 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 BEX1Q9HBH7 125 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 GPN1Q9HCN4 374 aaPredicted RBP5.79□□□□□ -1.48
NUP54-204ENST00000506098 SLC35D1Q9NTN3 355 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 COMMD9Q9P000 198 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 WASHC3Q9Y3C0 194 aa5.79□□□□□ -1.48
NUP54-204ENST00000506098 MTORP42345 2549 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 DUXBA0A1W2PPF3 345 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 TIMM23O14925 209 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 CREBL2O60519 120 aaPredicted RBP5.78□□□□□ -1.48
NUP54-204ENST00000506098 RAMP3O60896 148 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 FCGR3BO75015 233 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 VENTXO95231 258 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 IGKV1-39P01597 117 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 IGKV1D-39P04432 117 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 IL6RP08887 468 aaPredicted RBP5.78□□□□□ -1.48
NUP54-204ENST00000506098 HLA-GP17693 338 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 HNF1AP20823 631 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 LPAR6P43657 344 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 LGALS7P47929 136 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 SRPXP78539 464 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 SLC9A3R2Q15599 337 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 GUCA2BQ16661 112 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 RTL8BQ17RB0 113 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 SP6Q3SY56 376 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 CLEC9AQ6UXN8 241 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 MOB3BQ86TA1 216 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 SELENOHQ8IZQ5 122 aaKnown RBP5.78□□□□□ -1.48
NUP54-204ENST00000506098 BCL6BQ8N143 479 aaPredicted RBP5.78□□□□□ -1.48
NUP54-204ENST00000506098 LGI3Q8N145 548 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 C12orf45Q8N5I9 185 aaPredicted RBP5.78□□□□□ -1.48
NUP54-204ENST00000506098 Q8N6K4 173 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 OR52B4Q8NGK2 314 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 OR4S2Q8NH73 311 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 OSR1Q8TAX0 266 aaPredicted RBP5.78□□□□□ -1.48
NUP54-204ENST00000506098 PIFOQ8TCI5 191 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 ST8SIA2Q92186 375 aa5.78□□□□□ -1.48
NUP54-204ENST00000506098 SEC22AQ96IW7 307 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms