RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 REC114Q7Z4M0 266 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 MOGAT3Q86VF5 341 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 FAM122AQ96E09 287 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 NPCDR1Q9BY65 106 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 SLC25A15Q9Y619 301 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 SVEP1Q4LDE5 3571 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 TRBV24-1A0A075B6N3 115 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 MYOD1P15172 320 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 SSX2Q16385 188 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 OR2V2Q96R30 315 aa13.71□□□□□ -0.21
CCDC88B-210ENST00000494566 LRRC30A6NM36 301 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 RNF212BA8MTL3 300 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 TM4SF5O14894 197 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 FCGR3BO75015 233 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 SLC35B1P78383 322 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 SERF2P84101 59 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 EIF4EBP1Q13541 118 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 CYP2G1PQ6ZSU1 146 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 ZADH2Q8N4Q0 377 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 OR2T10Q8NGZ9 312 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 SRD5A3Q9H8P0 318 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 TET2Q6N021 2002 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 TRAV3A0A0B4J244 114 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 PROP1O75360 226 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 CASP6P55212 293 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 RPL39P5Q59GN2 51 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 DPPA3Q6W0C5 159 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 ABHD12Q8N2K0 398 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 C1orf162Q8NEQ5 155 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 GNG12Q9UBI6 72 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 ZNF705FA8MVS1 300 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 DVL1O14640 695 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 ZNF705DP0CH99 300 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 ZNF705BP0CI00 300 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 GCSAMQ8N6F7 178 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 PSMG3Q9BT73 122 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 FAM215AQ9Y5M1 114 aa13.7□□□□□ -0.22
CCDC88B-210ENST00000494566 AHRRA9YTQ3 701 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 SLC17A3O00476 420 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 WNT2P09544 360 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 CATR1Q13166 79 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 TGIF2LYQ8IUE0 185 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 AGMATQ9BSE5 352 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 HSPB7Q9UBY9 170 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 C15orf65H3BRN8 121 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 CDC34P49427 236 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 BATFQ16520 125 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 TMEM14EPQ6UXP3 125 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 DEFB108BQ8NET1 73 aa13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 ACTR3CQ9C0K3 210 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-210ENST00000494566 TANC2Q9HCD6 1990 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 CTXND1A0A1B0GTU2 59 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 ACTL6BO94805 426 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 HRASP01112 189 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 OR9G9P0C7N8 305 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 IL3RAP26951 378 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 GNB1P62873 340 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 MBNL2Q5VZF2 373 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 MIC13Q5XKP0 118 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 MARCH11A6NNE9 402 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 P0C879 139 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 ZNF134P52741 427 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 JOSD1Q15040 202 aaPredicted RBP13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 TEX38Q6PEX7 206 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 ITLN1Q8WWA0 313 aa13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 PINX1Q96BK5 328 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.68□□□□□ -0.22
CCDC88B-210ENST00000494566 A0A1W2PPV4 95 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 SLC31A2O15432 143 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 RBFOX2O43251 390 aaKnown RBP eCLIP13.67□□□□□ -0.228e-13■□□□□ 10.4
CCDC88B-210ENST00000494566 SPINT2O43291 252 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 FAM27E3Q08E93 113 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 TDRG1Q3Y452 100 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 SPATA31B1PQ5VZV4 182 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 PRR7Q8TB68 274 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 NEIL1Q96FI4 390 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 TMEM147Q9BVK8 224 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 TRAPPC1Q9Y5R8 145 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 RRHO14718 337 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 GPR12P47775 334 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 MSMO1Q15800 293 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 C1orf229Q6ZS94 237 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 SGMS2Q8NHU3 365 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 HEYLQ9NQ87 328 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 SH3BGRL2Q9UJC5 107 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 SCO2A0A1W2PP80 73 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 ZNF891A8MT65 544 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 CBLN1P23435 193 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 PAX5Q02548 391 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 P2RX4Q99571 388 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 DCAF16Q9NXF7 216 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 LRBAP50851 2863 aa13.67□□□□□ -0.22
CCDC88B-210ENST00000494566 MBD3L4A6NDZ8 208 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 MBD3L3A6NE82 208 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 MBD3L5A6NJ08 208 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 SRRM5B3KS81 715 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 F2Z2F3 143 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 M0R1X1 148 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 ARL14EPLP0DKL9 152 aa13.66□□□□□ -0.22
CCDC88B-210ENST00000494566 RPL29P47914 159 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms