RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 TMEM167AQ8TBQ9 72 aa12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 MYOZ3Q8TDC0 251 aa12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 SRSF12Q8WXF0 261 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 ZNF486Q96H40 463 aaPredicted RBP12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 PHB2Q99623 299 aa12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 THAP7Q9BT49 309 aaPredicted RBP12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 KLK15Q9H2R5 256 aa12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 SLC2A9Q9NRM0 540 aa12.71□□□□□ -0.37
MSH5-SAPCD1-206ENST00000491552 ECI1P42126 302 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CDX1P47902 265 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 RND3P61587 244 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ZNF79Q15937 498 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 POU2AF1Q16633 256 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 OR4A47Q6IF82 309 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 C8orf86Q6ZUL3 223 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 OR4A5Q8NH83 315 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TMEM68Q96MH6 324 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 BET1LQ9NYM9 111 aa12.7□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MSGN1A6NI15 193 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CD40LGP29965 261 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MAS1LP35410 378 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ETV6P41212 452 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 LPAR6P43657 344 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 RAB9AP51151 201 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ERVK-16P61578 105 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ASPHD1Q5U4P2 390 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ETV3LQ6ZN32 361 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 Q8N402 240 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 DMBX1Q8NFW5 382 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 OR13C8Q8NGS7 320 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ZFAND1Q8TCF1 268 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 C4orf3Q8WVX3 66 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TRIM63Q969Q1 353 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 HRASLSQ9HDD0 168 aa12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 FAM212BQ9NTI7 297 aaPredicted RBP12.69□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 PLXNB1O43157 2135 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MPPED1O15442 326 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 PI3P19957 117 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 PIGPP57054 158 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 KIAA0141Q14154 515 aaPredicted RBP12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ZNF585BQ52M93 769 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 C10orf55Q5SWW7 151 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ZNF491Q8N8L2 437 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MARCH1Q8TCQ1 289 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CASTOR1Q8WTX7 329 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MRGPRFQ96AM1 343 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 UBE2E2Q96LR5 201 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 PRRT1Q99946 306 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TMEM140Q9NV12 185 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 VSIG4Q9Y279 399 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 FBN3Q75N90 2809 aa12.68□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MARCH11A6NNE9 402 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 H3BUA1 57 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CTSDP07339 412 aaPredicted RBP12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 APELAP0DMC3 54 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 RPL27AP46776 148 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TPPP2P59282 170 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 AP3S2P59780 193 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 RPL8P62917 257 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TOMM5Q8N4H5 51 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CCDC71LQ8N9Z2 235 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 OR5T1Q8NG75 326 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 OR51S1Q8NGJ8 323 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MS4A10Q96PG2 267 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SPIN2AQ99865 258 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SPIN2BQ9BPZ2 258 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SRRQ9GZT4 340 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SLA2Q9H6Q3 261 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 GNB4Q9HAV0 340 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ZNF355PQ9NSJ1 428 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SLC2A8Q9NY64 477 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 COPZ2Q9P299 210 aa12.67□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 UPK2O00526 184 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 IL6RP08887 468 aaPredicted RBP12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 RPA2P15927 270 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 HLA-GP17693 338 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CD33P20138 364 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 FAUP35544 74 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MYCNOSP40205 109 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 KLF9Q13886 244 aaPredicted RBP12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SURF2Q15527 256 aaPredicted RBP12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 DEFB136Q30KP8 78 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 RAX2Q96IS3 184 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 MCUBQ9NWR8 336 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SCP2D1Q9UJQ7 156 aa12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 C14orf166Q9Y224 244 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TRAV3A0A0B4J244 114 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TEX22C9J3V5 150 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 H0Y980 276 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CCL24O00175 119 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 KRASP01116 189 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 TRGV3P03979 118 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 SERPINE2P07093 398 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 FGF2P09038 288 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 OR9G9P0C7N8 305 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 G6PCP35575 357 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 RUNX1Q01196 453 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 CADM3Q8N126 398 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 LINC00482Q8N8I6 264 aa12.65□□□□□ -0.38
MSH5-SAPCD1-206ENST00000491552 ADAD2Q8NCV1 583 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms