RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 MAS1LP35410 378 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 CRIP2P52943 208 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-210ENST00000489961 NDPQ00604 133 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 SRSF4Q08170 494 aaKnown RBP8.56□□□□□ -1.04
VPS13D-210ENST00000489961 TRIM16LQ309B1 348 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 SGPP2Q8IWX5 399 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 COMMD1Q8N668 190 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 C11orf44Q8N8P7 122 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 SGMS2Q8NHU3 365 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 GRPEL2Q8TAA5 225 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 WIPF2Q8TF74 440 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-210ENST00000489961 TP53RKQ96S44 253 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 NAA60Q9H7X0 242 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 ZNF430Q9H8G1 570 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-210ENST00000489961 TMEM140Q9NV12 185 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 KCNIP3Q9Y2W7 256 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 WSB1Q9Y6I7 421 aa8.56□□□□□ -1.04
VPS13D-210ENST00000489961 ARPC1BO15143 372 aaKnown RBP8.55□□□□□ -1.04
VPS13D-210ENST00000489961 LYRM1O43325 122 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 KRASP01116 189 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 OR5AC1P0C628 307 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 CD28P10747 220 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 AKR1C4P17516 323 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 UCP1P25874 307 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 G6PCP35575 357 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 CCR6P51684 374 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 RPL8P62917 257 aaKnown RBP8.55□□□□□ -1.04
VPS13D-210ENST00000489961 DHODHQ02127 395 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 ECSCRQ19T08 205 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 SP6Q3SY56 376 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 TEX38Q6PEX7 206 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 UNQ5815/PRO19632Q6UWF5 114 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 TMED4Q7Z7H5 227 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 ZNF329Q86UD4 541 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 CADM3Q8N126 398 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 ADAD2Q8NCV1 583 aaKnown RBP8.55□□□□□ -1.04
VPS13D-210ENST00000489961 PHB2Q99623 299 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 FAM103A1Q9BTL3 118 aaKnown RBP8.55□□□□□ -1.04
VPS13D-210ENST00000489961 FBXO7Q9Y3I1 522 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 NUBP2Q9Y5Y2 271 aa8.55□□□□□ -1.04
VPS13D-210ENST00000489961 TET2Q6N021 2002 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-210ENST00000489961 PLXNB1O43157 2135 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 A0A1W2PN81 502 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 TCRBV4S1A1TA0A5B7 111 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 G3V318 75 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 UPK2O00526 184 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 PLA2G10O15496 165 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 UPK1BO75841 260 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 SNAPC5O75971 98 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 NDUFB6O95139 128 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 OPN1MWP04001 364 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 FGF2P09038 288 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 OPN1MW2P0DN77 364 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 OPN1MW3P0DN78 364 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 EGR2P11161 476 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-210ENST00000489961 ANXA3P12429 323 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 HLA-GP17693 338 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 CHRNA7P36544 502 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 AKR1C2P52895 323 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 SSBP2P81877 361 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-210ENST00000489961 MRGPRG-AS1Q2M3A8 158 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 AKIRIN2Q53H80 203 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 CXorf66Q5JRM2 361 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-210ENST00000489961 MZT2BQ6NZ67 158 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 C10orf99Q6UWK7 81 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 H2BFWTQ7Z2G1 175 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 CENPSQ8N2Z9 138 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 LFNGQ8NES3 379 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 SRSF12Q8WXF0 261 aaKnown RBP8.54□□□□□ -1.04
VPS13D-210ENST00000489961 TMEM230Q96A57 120 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 TMEM68Q96MH6 324 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 TSC22D3Q99576 134 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 TMEM222Q9H0R3 208 aa8.54□□□□□ -1.04
VPS13D-210ENST00000489961 FOXA2Q9Y261 457 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-210ENST00000489961 MSGN1A6NI15 193 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 M0QZ24 198 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 IGKV1-39P01597 117 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 IGHG4P01861 327 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 IGKV1D-39P04432 117 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 ELANEP08246 267 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 IL6RP08887 468 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-210ENST00000489961 PPIFP30405 207 aaKnown RBP8.53□□□□□ -1.04
VPS13D-210ENST00000489961 BTCP35070 178 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 RPL27AP46776 148 aaKnown RBP8.53□□□□□ -1.04
VPS13D-210ENST00000489961 CD83Q01151 205 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 CFHR3Q02985 330 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 FOXE3Q13461 319 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 TMEM128Q5BJH2 165 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 KHDC1LQ5JSQ8 128 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 TMEM65Q6PI78 240 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 ZNF695Q8IW36 515 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 MINDY2Q8NBR6 621 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 OR5M8Q8NGP6 311 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 RNASE11Q8TAA1 199 aaKnown RBP8.53□□□□□ -1.04
VPS13D-210ENST00000489961 GLYATL2Q8WU03 294 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 GALNT14Q96FL9 552 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 SEC22AQ96IW7 307 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 SPIN2AQ99865 258 aa8.53□□□□□ -1.04
VPS13D-210ENST00000489961 CITED2Q99967 270 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-210ENST00000489961 SPIN2BQ9BPZ2 258 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms