RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 FAM223AQ8IWN6 122 aa13.54□□□□□ -0.24
COL9A3-212ENST00000481800 PUSL1Q8N0Z8 303 aaKnown RBP13.54□□□□□ -0.24
COL9A3-212ENST00000481800 TTC9CQ8N5M4 171 aa13.54□□□□□ -0.24
COL9A3-212ENST00000481800 FYTTD1Q96QD9 318 aaKnown RBP13.54□□□□□ -0.24
COL9A3-212ENST00000481800 SMAD5-AS1Q9Y6J3 95 aa13.54□□□□□ -0.24
COL9A3-212ENST00000481800 RBFOX2O43251 390 aaKnown RBP eCLIP13.53□□□□□ -0.24
COL9A3-212ENST00000481800 PMP2P02689 132 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 GP9P14770 177 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 TAS2R46P59540 309 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 KLF5Q13887 457 aaPredicted RBP13.53□□□□□ -0.24
COL9A3-212ENST00000481800 RPEL1Q2QD12 228 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 ZNF818PQ6ZRF7 136 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 OR5H2Q8NGV7 314 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 HRASLSQ9HDD0 168 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 AKIP1Q9NQ31 210 aa13.53□□□□□ -0.24
COL9A3-212ENST00000481800 HMX3A6NHT5 357 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 RFX2P48378 723 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 SYNJ2BPP57105 145 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 RPL8P62917 257 aaKnown RBP13.52□□□□□ -0.25
COL9A3-212ENST00000481800 EXOSC2Q13868 293 aaKnown RBP13.52□□□□□ -0.25
COL9A3-212ENST00000481800 AADACL3Q5VUY0 350 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 NECAP1Q8NC96 275 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 OR9G4Q8NGQ1 327 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 OR51H1Q8NH63 302 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 OR4A5Q8NH83 315 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 CD300LFQ8TDQ1 290 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 CMTM3Q96MX0 182 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 ZNF2Q9BSG1 426 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-212ENST00000481800 ZNF257Q9Y2Q1 563 aa13.52□□□□□ -0.25
COL9A3-212ENST00000481800 TRBV9A0A0B4J1U6 114 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 TEX22C9J3V5 150 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 RBMXL2O75526 392 aaKnown RBP13.51□□□□□ -0.25
COL9A3-212ENST00000481800 HPRT1P00492 218 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 TRBV12-3P01733 135 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 APOA1P02647 267 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 EIF4EP06730 217 aaKnown RBP13.51□□□□□ -0.25
COL9A3-212ENST00000481800 IL6RP08887 468 aaPredicted RBP13.51□□□□□ -0.25
COL9A3-212ENST00000481800 HLA-GP17693 338 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 RORCP51449 518 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 TAS2R31P59538 309 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 ZNF45Q02386 682 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 DHRS11Q6UWP2 260 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 ASCL2Q99929 193 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 SLC2A9Q9NRM0 540 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 ANAPC10Q9UM13 185 aa13.51□□□□□ -0.25
COL9A3-212ENST00000481800 OR2J3O76001 311 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 DHFRP00374 187 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 ZNF735P0CB33 412 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 NQO2P16083 231 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 NAT1P18440 290 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 GNRHRP30968 328 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 FAM209BQ5JX69 171 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 OR4A47Q6IF82 309 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 MZT2AQ6P582 158 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 HAPLN4Q86UW8 402 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 OR6F1Q8NGZ6 308 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 MOB3AQ96BX8 217 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 BET1LQ9NYM9 111 aa13.5□□□□□ -0.25
COL9A3-212ENST00000481800 NPIPB5A8MRT5 1133 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 IGLV1-51P01701 117 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 HLA-DMAP28067 261 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 C15orf32Q32M92 178 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 SNX29P2Q8IUI4 249 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 CMTM1Q8IZ96 169 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 DMBX1Q8NFW5 382 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 PLEKHA2Q9HB19 425 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 SCPEP1Q9HB40 452 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 PEMTQ9UBM1 199 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 FBXL7Q9UJT9 491 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 ADAM30Q9UKF2 790 aa13.49□□□□□ -0.25
COL9A3-212ENST00000481800 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.48□□□□□ -0.25
COL9A3-212ENST00000481800 FAM25AB3EWG3 89 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 FAM25CB3EWG5 89 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 FAM25GB3EWG6 89 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 E7EUB6 86 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 HPGDSO60760 199 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 DEFA4P12838 97 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 PSMB6P28072 239 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 HRH1P35367 487 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 ERVK-16P61578 105 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 TSPAN5P62079 268 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 GPX8Q8TED1 209 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 AP3S1Q92572 193 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 WWC2-AS2Q96NR7 200 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 COMMD5Q9GZQ3 224 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 U3KQK5 164 aa13.48□□□□□ -0.25
COL9A3-212ENST00000481800 H0Y980 276 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 UPK2O00526 184 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 PGLYRP1O75594 196 aaPredicted RBP13.47□□□□□ -0.25
COL9A3-212ENST00000481800 S1PR2O95136 353 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 RLN1P04808 185 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 MYOD1P15172 320 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 AREGP15514 252 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 ELK1P19419 428 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 S100GP29377 79 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 POU2AF1Q16633 256 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 LYSMD2Q8IV50 215 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 TMEM140Q9NV12 185 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 COMMD9Q9P000 198 aa13.47□□□□□ -0.25
COL9A3-212ENST00000481800 A0A1B0GW64 132 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms