RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 KLF5Q13887 457 aaPredicted RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 INSL4Q14641 139 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 PRSS8Q16651 343 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 TIMM50Q3ZCQ8 353 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 PLAC9Q5JTB6 97 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 UBE2UQ5VVX9 321 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 HACD4Q5VWC8 232 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 OR4A47Q6IF82 309 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ZNF343Q6P1L6 599 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 IZUMO2Q6UXV1 221 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ZNF66Q6ZN08 573 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 HSD17B13Q7Z5P4 300 aaPredicted RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 CROCCP3Q8IVE0 287 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 H1FOOQ8IZA3 346 aaPredicted RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ZBTB34Q8NCN2 500 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ADAD2Q8NCV1 583 aaKnown RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 OR4A5Q8NH83 315 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 DYNLRB2Q8TF09 96 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 TMEM203Q969S6 136 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 C8orf49Q96NF6 230 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ATP6V0BQ99437 205 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 GFI1Q99684 422 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 SRSF8Q9BRL6 282 aaKnown RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 FAM103A1Q9BTL3 118 aaKnown RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ALX4Q9H161 411 aaPredicted RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ZC4H2Q9NQZ6 224 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 SLC2A8Q9NY64 477 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 TECRQ9NZ01 308 aaKnown RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 PEF1Q9UBV8 284 aaKnown RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 RAB26Q9ULW5 256 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 AK6Q9Y3D8 172 aaKnown RBP3.17□□□□□ -1.9
VPS13D-208ENST00000481484 ETV7Q9Y603 341 aa3.17□□□□□ -1.9
VPS13D-208ENST00000481484 PLECQ15149 4684 aaKnown RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 TRBV9A0A0B4J1U6 114 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 LCE6AA0A183 80 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 DPPA5A6NC42 116 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 TRIM64CA6NLI5 447 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 LGALS9O00182 355 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 TPPPO94811 219 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 HLA-DQB1P01920 261 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CRYGBP07316 175 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 GNB3P16520 340 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 NAT1P18440 290 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CBX5P45973 191 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 RPL27AP46776 148 aaKnown RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 TMEM50BP56557 158 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CLDN12P56749 244 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 SYNJ2BPP57105 145 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 SSBP2P81877 361 aaPredicted RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 RHOGP84095 191 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 TNXAQ16473 311 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 KLK9Q2XQG4 91 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 ANKRD55Q3KP44 614 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 C2orf76Q3KRA6 126 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CASC10Q5T4H9 136 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 HES5Q5TA89 166 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 SFXN4Q6P4A7 337 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CNIH2Q6PI25 160 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 SLC16A13Q7RTY0 426 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 STPG3Q8N7X2 389 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 DRAXINQ8NBI3 349 aaPredicted RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 TMEM167AQ8TBQ9 72 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CD300LFQ8TDQ1 290 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 ACOT12Q8WYK0 555 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 MARC2Q969Z3 335 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 EEF1AKMT3Q96AZ1 226 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 RITA1Q96K30 269 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CXorf58Q96LI9 332 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 CLCC1Q96S66 551 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 THAP7Q9BT49 309 aaPredicted RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 YTHDF1Q9BYJ9 559 aaKnown RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 TUBA4BQ9H853 241 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 ZNF430Q9H8G1 570 aaPredicted RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 VCX3AQ9NNX9 186 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 RHBDL2Q9NX52 303 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 BET1LQ9NYM9 111 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 COMMD9Q9P000 198 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 THYN1Q9P016 225 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 PFDN2Q9UHV9 154 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 ZNF230Q9UIE0 474 aaPredicted RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 ANXA10Q9UJ72 324 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 KLK9Q9UKQ9 250 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 KCNK7Q9Y2U2 307 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 RBMX2Q9Y388 322 aaKnown RBP3.16□□□□□ -1.9
VPS13D-208ENST00000481484 OR2W1Q9Y3N9 320 aa3.16□□□□□ -1.9
VPS13D-208ENST00000481484 A0A075B6Q4 140 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 TRBV7-1A0A0A6YYK4 115 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 TRAV25A0A0B4J276 109 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 TMEM235A6NFC5 223 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 LINC00473A8K010 186 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 BMPR1BO00238 502 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 FCN1O00602 326 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 FCGR3BO75015 233 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 GGCTO75223 188 aaKnown RBP3.15□□□□□ -1.91
VPS13D-208ENST00000481484 PROP1O75360 226 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 ZNF735P0CB33 412 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 MYOD1P15172 320 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 PSMB9P28065 219 aa3.15□□□□□ -1.91
VPS13D-208ENST00000481484 PSMB6P28072 239 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms