RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 A0A0G2JMM0 328 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 A0A1W2PPB8 328 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 A0A1W2PRS3 328 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 KIR3DP1A8MWS1 328 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 ANOS1P23352 680 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 IL11RAQ14626 422 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 LCN12Q6JVE5 192 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 TGIF2LYQ8IUE0 185 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 OCC1Q8TAD7 63 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 EGLN1Q9GZT9 426 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 TMEM191AQ9H0A3 160 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 NRN1Q9NPD7 142 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 OOEPA6NGQ2 149 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 OR1B1Q8NGR6 318 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 TMEM167BQ9NRX6 74 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 LAMTOR2Q9Y2Q5 125 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 MED13Q9UHV7 2174 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 BRCA2P51587 3418 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 LOC389332A0A1B0GUA5 103 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 FOXG1P55316 489 aaPredicted RBP11.44□□□□□ -0.58
USP42-206ENST00000479544 MZT1Q08AG7 82 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 PCNX3Q9H6A9 2034 aa11.44□□□□□ -0.58
USP42-206ENST00000479544 NUDT3O95989 172 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 RELBQ01201 579 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 KCNMB1Q16558 191 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 C10orf128Q5T292 105 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 SPG11Q96JI7 2443 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 A0A1W2PQM1 296 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 OR8B3Q8NGG8 313 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 DYNLRB1Q9NP97 96 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 CHCHD2Q9Y6H1 151 aaPredicted RBP11.43□□□□□ -0.58
USP42-206ENST00000479544 TRGV10A0A0A0MS01 117 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 IFITM10A6NMD0 228 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 J3QR06 171 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 PPIHO43447 177 aaKnown RBP11.43□□□□□ -0.58
USP42-206ENST00000479544 BPIFB3P59826 476 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 PRSS33Q8NF86 280 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 CLDN14O95500 239 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 COL8A1P27658 744 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 SUB1P53999 127 aaKnown RBP eCLIP11.43□□□□□ -0.58
USP42-206ENST00000479544 LCN2P80188 198 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 HES1Q14469 280 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 KRTCAP3Q53RY4 240 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 GBGT1Q8N5D6 347 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 LRTM2Q8N967 370 aa11.43□□□□□ -0.58
USP42-206ENST00000479544 PNRC2Q9NPJ4 139 aaKnown RBP11.43□□□□□ -0.58
USP42-206ENST00000479544 ZFHX2Q9C0A1 2572 aaPredicted RBP11.42□□□□□ -0.58
USP42-206ENST00000479544 TRGV5A0A0B4J1U4 118 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 CCL1P22362 96 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 A0A1W2PR77 199 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 B4E171 279 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 K7ERU9 68 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 TSPAN7P41732 249 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 OR4S2Q8NH73 311 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 LSM10Q969L4 123 aaKnown RBP11.42□□□□□ -0.58
USP42-206ENST00000479544 DIRC2Q96SL1 478 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 SSBP4Q9BWG4 385 aaPredicted RBP11.42□□□□□ -0.58
USP42-206ENST00000479544 PLXNA4Q9HCM2 1894 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 RBP4P02753 201 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 CELA3AP09093 270 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 GZMHP20718 246 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 CFHR1Q03591 330 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 NMSQ5H8A3 153 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 DENND4AQ7Z401 1863 aa11.42□□□□□ -0.58
USP42-206ENST00000479544 OR2J3O76001 311 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 GCHFRP30047 84 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 NEU1Q99519 415 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 TCFL5Q9UL49 500 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 TNCP24821 2201 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 VENTXO95231 258 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 MEOX1P50221 254 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 PPOXP50336 477 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 SOX8P57073 446 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 PRSS8Q16651 343 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 C1orf194Q5T5A4 169 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 C1orf210Q8IVY1 113 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 PLPPR1Q8TBJ4 325 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 PLSCR2Q9NRY7 297 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 C12orf77C9JDV5 145 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 ACSF3Q4G176 576 aaPredicted RBP11.41□□□□□ -0.58
USP42-206ENST00000479544 RPL39P5Q59GN2 51 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 FER1L6-AS2Q96M78 137 aa11.41□□□□□ -0.58
USP42-206ENST00000479544 P01737 135 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 MOGAT3Q86VF5 341 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 STPG3Q8N7X2 389 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 BCL2L2Q92843 193 aaPredicted RBP11.4□□□□□ -0.58
USP42-206ENST00000479544 TMEM54Q969K7 222 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 KLF13Q9Y2Y9 288 aaPredicted RBP11.4□□□□□ -0.58
USP42-206ENST00000479544 GAGE10A6NGK3 116 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 CEACAM18A8MTB9 384 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 IL15RAQ13261 267 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 PDPNQ86YL7 162 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 ZNF645Q8N7E2 425 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 MBD3L1Q8WWY6 194 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 ALKBH7Q9BT30 221 aaPredicted RBP11.4□□□□□ -0.58
USP42-206ENST00000479544 MS4A5Q9H3V2 200 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 C5orf42Q9H799 3197 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 LEPROTL1O95214 131 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 TMEM178AQ8NBL3 297 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 PGLYRP4Q96LB8 373 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms