RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 IFNGR2P38484 337 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 CDKN1BP46527 198 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 HMGA2P52926 109 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 EMP1P54849 157 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 ATP5IP56385 69 aaPredicted RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 RBM11P57052 281 aaKnown RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 DEFB131AP59861 70 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 SPCS3P61009 180 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 IL18Q14116 193 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 KISS1Q15726 138 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 TBCEQ15813 527 aaPredicted RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 SLC22A6Q4U2R8 563 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 PLAC9Q5JTB6 97 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 SLC35D3Q5M8T2 416 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 LY6G6FQ5SQ64 297 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 SLC25A30Q5SVS4 291 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 TMEM69Q5SWH9 247 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 HES5Q5TA89 166 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 FAM222AQ5U5X8 452 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 LPCAT4Q643R3 524 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 FAM90A2PQ658T7 463 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 IDO2Q6ZQW0 420 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 SSX9Q7RTT3 188 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 BCDIN3DQ7Z5W3 292 aaKnown RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 GPR141Q7Z602 305 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 CEACAM19Q7Z692 300 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 LINC00518Q8N0U6 118 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 GBGT1Q8N5D6 347 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 TTC9CQ8N5M4 171 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 AQP11Q8NBQ7 271 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 BPIFCQ8NFQ6 507 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 ASB17Q8WXJ9 295 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 C10orf35Q96D05 121 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 ASB9Q96DX5 294 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 YPEL2Q96QA6 119 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 NIPSNAP1Q9BPW8 284 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 VCXQ9H320 206 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 SAV1Q9H4B6 383 aaPredicted RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 FNDC4Q9H6D8 234 aaPredicted RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 TMEM14BQ9NUH8 114 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 TMEM140Q9NV12 185 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 JPT1Q9UK76 154 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 KCNK7Q9Y2U2 307 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 IGHV3-49A0A0A0MS15 119 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 AQP12BA6NM10 295 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 KNCNA6PVL3 124 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 GABRPO00591 440 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 RGS16O15492 202 aaPredicted RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 MRPS14O60783 128 aaKnown RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 CDRT1O95170 752 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 MAS1P04201 325 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 CRYGCP07315 174 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 H2AFB2P0C5Z0 115 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 STAG3L2P0CL84 134 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 SPART-AS1P0CW21 52 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 MYOD1P15172 320 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 PSMB6P28072 239 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 GPR183P32249 361 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 CAPGP40121 348 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 MAP2K4P45985 399 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 NKX2-5P52952 324 aaPredicted RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 SMIM11AP58511 58 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 RPS7P62081 194 aaKnown RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 SUMO1P63165 101 aaKnown RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 KIR3DS1Q14943 382 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 USF2Q15853 346 aaPredicted RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 TNXAQ16473 311 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 PRSS8Q16651 343 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 KLK9Q2XQG4 91 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 COQ5Q5HYK3 327 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 NHLRC3Q5JS37 347 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 C6orf141Q5SZD1 244 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 LAMTOR1Q6IAA8 161 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 Q6ZSA8 131 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 SSX7Q7RTT5 188 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 CLRN3Q8NCR9 226 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 PXT1Q8NFP0 134 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 OR2AK2Q8NG84 335 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 OR51A2Q8NGJ7 313 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 RNASE11Q8TAA1 199 aaKnown RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 LRRC20Q8TCA0 184 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 EDARADDQ8WWZ3 215 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 C5orf30Q96GV9 206 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 FYTTD1Q96QD9 318 aaKnown RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 PHB2Q99623 299 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 NIPSNAP3BQ9BS92 247 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 PARD6GQ9BYG4 376 aaPredicted RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 RIMS4Q9H426 269 aaPredicted RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 DAZ1Q9NQZ3 744 aaKnown RBP3.28□□□□□ -1.88
USP4-209ENST00000475873 DIABLOQ9NR28 239 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 ENOPH1Q9UHY7 261 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 KLK9Q9UKQ9 250 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 TRAPPC2LQ9UL33 140 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 ST3GAL6Q9Y274 331 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 UFC1Q9Y3C8 167 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 LRRC42Q9Y546 428 aa3.28□□□□□ -1.88
USP4-209ENST00000475873 EFCAB10A6NFE3 127 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 ZNF705FA8MVS1 300 aaPredicted RBP3.27□□□□□ -1.89
USP4-209ENST00000475873 CHEK1O14757 476 aa3.27□□□□□ -1.89
USP4-209ENST00000475873 RAB29O14966 203 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms