RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CX3CL1P78423 397 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 IZUMO4Q1ZYL8 232 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 TRIM16LQ309B1 348 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 ANKRD55Q3KP44 614 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 TEX45Q8NA69 505 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 ENKURQ8TC29 256 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 NOL4LQ96MY1 436 aaPredicted RBP11.67□□□□□ -0.54
COL9A3-209ENST00000469852 ANK2Q01484 3957 aa11.67□□□□□ -0.54
COL9A3-209ENST00000469852 OR2A4O95047 310 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 SFT2D2O95562 160 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 CDS2O95674 445 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 EGR2P11161 476 aaPredicted RBP11.66□□□□□ -0.54
COL9A3-209ENST00000469852 VAMP1P23763 118 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 DEFA1P59665 94 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 DEFA3P59666 94 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 GNB1P62873 340 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 PRSS8Q16651 343 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 C10orf55Q5SWW7 151 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 SLC35E3Q7Z769 313 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 SELENOHQ8IZQ5 122 aaKnown RBP11.66□□□□□ -0.54
COL9A3-209ENST00000469852 DUSP18Q8NEJ0 188 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 DMBX1Q8NFW5 382 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 OR4F5Q8NH21 305 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 OR2T6Q8NHC8 308 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM167AQ8TBQ9 72 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 OR2A7Q96R45 310 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 FAM103A1Q9BTL3 118 aaKnown RBP11.66□□□□□ -0.54
COL9A3-209ENST00000469852 BET1LQ9NYM9 111 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 NUBP2Q9Y5Y2 271 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 NBEAL1Q6ZS30 2694 aa11.66□□□□□ -0.54
COL9A3-209ENST00000469852 TET2Q6N021 2002 aaPredicted RBP11.65□□□□□ -0.54
COL9A3-209ENST00000469852 C9orf170A2RU37 121 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 UPK2O00526 184 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 ATP6V0E1O15342 81 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 B3GALNT1O75752 331 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 H2AFB2P0C5Z0 115 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 OR4E1P0C645 316 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 P0C879 139 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 VDAC2P45880 294 aaPredicted RBP11.65□□□□□ -0.54
COL9A3-209ENST00000469852 KRTAP10-3P60369 221 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 DCTN2Q13561 401 aaKnown RBP11.65□□□□□ -0.54
COL9A3-209ENST00000469852 AWAT1Q58HT5 328 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 ARSJQ5FYB0 599 aaPredicted RBP11.65□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM268Q5VZI3 342 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 HIST2H2BDQ6DRA6 164 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 C10orf99Q6UWK7 81 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 OR52B4Q8NGK2 314 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 CASTOR1Q8WTX7 329 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM56Q96MV1 263 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 OR51J1Q9H342 316 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 PALMDQ9NP74 551 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 PARP11Q9NR21 331 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 KCNIP3Q9Y2W7 256 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 NSG2Q9Y328 171 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 TMEM56-RWDD3S4R434 201 aa11.65□□□□□ -0.54
COL9A3-209ENST00000469852 A0A1B0GW64 132 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 CLPSL1A2RUU4 121 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 DBX1A6NMT0 343 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 E7EUB6 86 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 HLA-AP01891 365 aaKnown RBP11.64□□□□□ -0.55
COL9A3-209ENST00000469852 MECP2P51608 486 aaKnown RBP11.64□□□□□ -0.55
COL9A3-209ENST00000469852 PROK1P58294 105 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 UBE2MP61081 183 aaKnown RBP11.64□□□□□ -0.55
COL9A3-209ENST00000469852 ERVK-16P61578 105 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 DHRS2Q13268 280 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 FXYD3Q14802 87 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 TNXAQ16473 311 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 ZNF562Q6V9R5 426 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 SLC35G3Q8N808 338 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 VSTM2AQ8TAG5 236 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 RBPMSQ93062 196 aaKnown RBP11.64□□□□□ -0.55
COL9A3-209ENST00000469852 SEC22CQ9BRL7 303 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 WNT10AQ9GZT5 417 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 RNF114Q9Y508 228 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 MMP24Q9Y5R2 645 aa11.64□□□□□ -0.55
COL9A3-209ENST00000469852 CGB1A6NKQ9 187 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 G3V318 75 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 OPN1MWP04001 364 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 OPN1MW2P0DN77 364 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 OPN1MW3P0DN78 364 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 AKR1C2P52895 323 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 OR2B8PP59922 312 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 FOXL1Q12952 345 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 C4orf46Q504U0 113 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 LYZL2Q7Z4W2 148 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 LYG2Q86SG7 212 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 ZNF695Q8IW36 515 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 KLHDC1Q8N7A1 406 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 GRPEL2Q8TAA5 225 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 WIPF2Q8TF74 440 aaPredicted RBP11.63□□□□□ -0.55
COL9A3-209ENST00000469852 ARPC1AQ92747 370 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 AIFM2Q9BRQ8 373 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 ALX4Q9H161 411 aaPredicted RBP11.63□□□□□ -0.55
COL9A3-209ENST00000469852 WSB1Q9Y6I7 421 aa11.63□□□□□ -0.55
COL9A3-209ENST00000469852 HAX1O00165 279 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 KCNAB3O43448 404 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 IGF1P05019 195 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 APELAP0DMC3 54 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 ANXA3P12429 323 aa11.62□□□□□ -0.55
COL9A3-209ENST00000469852 COMPP49747 757 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms