RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 OR52E5Q8NH55 327 aa15.35■□□□□ 0.05
SMC4-209ENST00000468653 CLCC1Q96S66 551 aa15.35■□□□□ 0.05
SMC4-209ENST00000468653 MS4A7Q9GZW8 240 aaPredicted RBP15.35■□□□□ 0.05
SMC4-209ENST00000468653 A0A1W2PRD5 423 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 A0A1W2PRF3 423 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 A0A1W2PRM7 423 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 ATP6V1G1O75348 118 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 DYNLT3P51808 116 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 CLLU1Q5K131 121 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 TPTE2P1Q5T6R2 138 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 OR1S2Q8NGQ3 325 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 OR5C1Q8NGR4 320 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 PCNPQ8WW12 178 aaKnown RBP15.34■□□□□ 0.05
SMC4-209ENST00000468653 BET1LQ9NYM9 111 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 PRNDQ9UKY0 176 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 FOXA2Q9Y261 457 aaPredicted RBP15.34■□□□□ 0.05
SMC4-209ENST00000468653 MED13LQ71F56 2210 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 ODF3BA8MYP8 253 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 UPK2O00526 184 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 METTL15P1P0C7V9 234 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 HOXB4P17483 251 aaPredicted RBP15.34■□□□□ 0.05
SMC4-209ENST00000468653 UBAC2Q8NBM4 344 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 TMEM14BQ9NUH8 114 aa15.34■□□□□ 0.05
SMC4-209ENST00000468653 POLR3KQ9Y2Y1 108 aaPredicted RBP15.34■□□□□ 0.05
SMC4-209ENST00000468653 USP9YO00507 2555 aaPredicted RBP15.33■□□□□ 0.04
SMC4-209ENST00000468653 RNASEK-C17orf49H0YIS7 233 aa15.33■□□□□ 0.04
SMC4-209ENST00000468653 LY86O95711 162 aa15.33■□□□□ 0.04
SMC4-209ENST00000468653 IL6RP08887 468 aaPredicted RBP15.33■□□□□ 0.04
SMC4-209ENST00000468653 KRTAP10-9P60411 292 aa15.33■□□□□ 0.04
SMC4-209ENST00000468653 CLEC12BQ2HXU8 276 aa15.33■□□□□ 0.04
SMC4-209ENST00000468653 FAM74A1Q5RGS3 127 aa15.33■□□□□ 0.04
SMC4-209ENST00000468653 PUSL1Q8N0Z8 303 aaKnown RBP15.33■□□□□ 0.04
SMC4-209ENST00000468653 TCF19Q9Y242 345 aa15.33■□□□□ 0.04
SMC4-209ENST00000468653 STRAPQ9Y3F4 350 aaKnown RBP15.33■□□□□ 0.04
SMC4-209ENST00000468653 OR51B2Q9Y5P1 312 aa15.33■□□□□ 0.04
SMC4-209ENST00000468653 RPS10-NUDT3A0A1W2PQS6 291 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 KBTBD11O94819 623 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 LGALS7P47929 136 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 HSPE1P61604 102 aaKnown RBP15.32■□□□□ 0.04
SMC4-209ENST00000468653 ZNF266Q14584 549 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 PDLIM3Q53GG5 364 aaPredicted RBP15.32■□□□□ 0.04
SMC4-209ENST00000468653 EIF5AL1Q6IS14 154 aaKnown RBP15.32■□□□□ 0.04
SMC4-209ENST00000468653 VSTM2AQ8TAG5 236 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 TMED6Q8WW62 240 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 HIPK2Q9H2X6 1198 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 FKBP11Q9NYL4 201 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 ITGB1BP2Q9UKP3 347 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 HILPDAQ9Y5L2 63 aa15.32■□□□□ 0.04
SMC4-209ENST00000468653 HOXA1P49639 335 aaPredicted RBP15.31■□□□□ 0.04
SMC4-209ENST00000468653 LGALS4P56470 323 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 HBG1P69891 147 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 HBG2P69892 147 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 VMA21Q3ZAQ7 101 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 LDLRAD2Q5SZI1 272 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 LHFPL4Q7Z7J7 247 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 SLC25A32Q9H2D1 315 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 A0A1W2PPI3 338 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 FGF2P09038 288 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 TMEM14EPQ6UXP3 125 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 OR4A5Q8NH83 315 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 OR4C12Q96R67 309 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 TBX15Q96SF7 602 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 ENY2Q9NPA8 101 aa15.31■□□□□ 0.04
SMC4-209ENST00000468653 HEYLQ9NQ87 328 aaPredicted RBP15.31■□□□□ 0.04
SMC4-209ENST00000468653 WNK2Q9Y3S1 2297 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 FBXO24O75426 580 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 DFFBO76075 338 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 IGLV2-23P01705 113 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 SLC25A16P16260 332 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 USF1P22415 310 aaPredicted RBP15.3■□□□□ 0.04
SMC4-209ENST00000468653 RPP30P78346 268 aaKnown RBP15.3■□□□□ 0.04
SMC4-209ENST00000468653 RITA1Q96K30 269 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 TSNAXQ99598 290 aaKnown RBP15.3■□□□□ 0.04
SMC4-209ENST00000468653 ATP5SQ99766 215 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 HINT2Q9BX68 163 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 ZNF257Q9Y2Q1 563 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 CRYBG3Q68DQ2 2970 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 TACC2O95359 2948 aa15.3■□□□□ 0.04
SMC4-209ENST00000468653 TIMM23O14925 209 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 MYOD1P15172 320 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 VDAC2P45880 294 aaPredicted RBP15.29■□□□□ 0.04
SMC4-209ENST00000468653 MINOS1Q5TGZ0 78 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 OR8G2PQ6IF36 304 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 TMEM167AQ8TBQ9 72 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 ARV1Q9H2C2 271 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 BEX4Q9NWD9 120 aaPredicted RBP15.29■□□□□ 0.04
SMC4-209ENST00000468653 MINOS1-NBL1R4GNA1 71 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 SLC25A17O43808 307 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 IFNA10P01566 189 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 NMBP08949 121 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 UBE2E1P51965 193 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 RPL8P62917 257 aaKnown RBP15.29■□□□□ 0.04
SMC4-209ENST00000468653 ARL16Q0P5N6 197 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 LILRB2Q8N423 598 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 HSD17B11Q8NBQ5 300 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 PSMG3-AS1Q96PY0 264 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 GINS3Q9BRX5 216 aa15.29■□□□□ 0.04
SMC4-209ENST00000468653 OPN1MWP04001 364 aa15.28■□□□□ 0.04
SMC4-209ENST00000468653 OPN1MW2P0DN77 364 aa15.28■□□□□ 0.04
SMC4-209ENST00000468653 OPN1MW3P0DN78 364 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms