RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TGFBR3LH3BV60 316 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 IFNL4K9M1U5 179 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 MMDQ15546 238 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 RAMP1O60894 148 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 HERPUD1Q15011 391 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 TMEM170AQ8WVE7 144 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 NDUFAF3Q9BU61 184 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 TRBV6-7A0A0A0MS04 114 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 NPIPB7O75200 414 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 SPANXN1Q5VSR9 72 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 ZNF525Q8N782 197 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 PRR33A8MZF0 331 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 COX6B1P14854 86 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 CKS2P33552 79 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 CCL13Q99616 98 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 PILRBQ9UKJ0 227 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 SP9P0CG40 484 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 SPSB2Q99619 263 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 GDF15Q99988 308 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 FOXJ2Q9P0K8 574 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 LCTP09848 1927 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 LIPFP07098 398 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 ERVFRD-1P60508 538 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 C1QL4Q86Z23 238 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 DNASE2BQ8WZ79 361 aa16.16■□□□□ 0.18
CCDC88B-204ENST00000463837 A0A1B0GW64 132 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 GFRA3O60609 400 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 IL6RP08887 468 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 RND2P52198 227 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 HBBP68871 147 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 RSPO4Q2I0M5 234 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 HCP5Q6MZN7 132 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 ABHD12Q8N2K0 398 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 SAP25Q8TEE9 199 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 DICER1Q9UPY3 1922 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 GCSHP23434 173 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 CLEC2AQ6UVW9 174 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 LRTM2Q8N967 370 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 ZNF502Q8TBZ5 544 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 MAP1LC3AQ9H492 121 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 KLF14Q8TD94 323 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 C1QTNF5Q9BXJ0 243 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 GP6Q9HCN6 339 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 TMEM242Q9NWH2 141 aa16.15■□□□□ 0.18
CCDC88B-204ENST00000463837 M0R3E3 92 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 SGK494Q96LW2 274 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 AUP1Q9Y679 476 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 TRAV30A0A087WSZ9 112 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 A0A1W2PR77 199 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 PRR32B1ATL7 298 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 GPX4P36969 197 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 PSG9Q00887 426 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 HEPN1Q6WQI6 88 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 SOX21Q9Y651 276 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 LOC285556D6RIA3 1793 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 GUCD1Q96NT3 240 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 SSBP3Q9BWW4 388 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 MRPL13Q9BYD1 178 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 ITLN1Q8WWA0 313 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 ICE1Q9Y2F5 2266 aa16.14■□□□□ 0.17
CCDC88B-204ENST00000463837 COLCA2A8K830 154 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 NEU1Q99519 415 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 PEF1Q9UBV8 284 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 CHCHD2Q9Y6H1 151 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 RPL23P62829 140 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 RBPMS2Q6ZRY4 209 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 MIEN1Q9BRT3 115 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 IGHV3-72A0A0B4J1Y9 119 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 NDUFA2O43678 99 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 DMRTA1Q5VZB9 504 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 GTF3AQ92664 365 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 NKX2-8O15522 239 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 CCL8P80075 99 aa16.13■□□□□ 0.17
CCDC88B-204ENST00000463837 LOC107984156A0A0G2JMH3 177 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 CTSSP25774 331 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 ARL17AQ8IVW1 177 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 VKORC1L1Q8N0U8 176 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 FADS6Q8N9I5 356 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 OR4A5Q8NH83 315 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 CHODLQ9H9P2 273 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 PAQR4Q8N4S7 273 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 KCNS1Q96KK3 526 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 PSMG4Q5JS54 123 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 DNLZQ5SXM8 178 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 PCSK4Q6UW60 755 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 TCF24Q7RTU0 167 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 OR4C13Q8NGP0 309 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 OR1N2Q8NGR9 330 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 WNT10AQ9GZT5 417 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 A0A087WV48 116 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 HTN1P15515 57 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 SRSF4Q08170 494 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 TMEM186Q96B77 213 aa16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 TBL2Q9Y4P3 447 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BKO60814 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BJP06899 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 AREGP15514 252 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BOP23527 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BBP33778 126 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms