RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 CD1BP29016 333 aa12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 NKX2-1P43699 371 aaPredicted RBP12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 TUSC1Q2TAM9 212 aa12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 FOXRED2Q8IWF2 684 aa12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 VSTM2AQ8TAG5 236 aa12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 ZNF418Q8TF45 676 aaPredicted RBP12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 WDR89Q96FK6 387 aaPredicted RBP12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 TSNAXQ99598 290 aaKnown RBP12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 RNF5Q99942 180 aa12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 TMEM140Q9NV12 185 aa12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 FAM96BQ9Y3D0 163 aa12.22□□□□□ -0.45
TMEM39A-203ENST00000461654 IGHV3OR16-10A0A075B7F0 116 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 A0A0G2JRQ6 117 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 PVALBP20472 110 aaPredicted RBP12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 NUP62P37198 522 aaPredicted RBP12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 BPIFB3P59826 476 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 HILS1P60008 231 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 RAB32Q13637 225 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 POU2AF1Q16633 256 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 VMA21Q3ZAQ7 101 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 LDLRAD2Q5SZI1 272 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 OR4A47Q6IF82 309 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 C11orf87Q6NUJ2 197 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 OR4D5Q8NGN0 318 aa12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 LSM5Q9Y4Y9 91 aaKnown RBP12.21□□□□□ -0.45
TMEM39A-203ENST00000461654 STAB1Q9NY15 2570 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 FXYD6-FXYD2A0A087WZ82 144 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 FAM90A26D6RGX4 464 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 MED6O75586 246 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 P0C879 139 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 IL15RAQ13261 267 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 HES1Q14469 280 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 IZUMO4Q1ZYL8 232 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 VKORC1L1Q8N0U8 176 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 OR2T10Q8NGZ9 312 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 OR4A5Q8NH83 315 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 JMJD8Q96S16 334 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 POMT1Q9Y6A1 747 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 ARHGAP32A7KAX9 2087 aa12.2□□□□□ -0.46
TMEM39A-203ENST00000461654 L7N2F9 121 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 PITX3O75364 302 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 MOSP00540 346 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 MBPP02686 304 aaPredicted RBP12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 FAM106CPP0CH98 169 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 IGHV4-38-2P0DP08 117 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 SLC25A4P12235 298 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 VAMP2P63027 116 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 HABP2Q14520 560 aaPredicted RBP12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 Q5BKY6 102 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 RUSC1-AS1Q66K80 236 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 PRSS54Q6PEW0 395 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 Q6ZRM9 215 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 ZNF546Q86UE3 836 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 PIP4P2Q8N4L2 257 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 CFHR4Q92496 578 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 DCUN1D4Q92564 292 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 CLCC1Q96S66 551 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 FKBP11Q9NYL4 201 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 BET1LQ9NYM9 111 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 PRNDQ9UKY0 176 aa12.19□□□□□ -0.46
TMEM39A-203ENST00000461654 TRAV14DV4A0A0A6YYC5 116 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 HMSDA8MTL9 139 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 K7EPK0 472 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 NXPH3O95157 252 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 IGKV1D-33P01593 117 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 IGKV1-33P01594 117 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 FBP1P09467 338 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 SAA1P0DJI8 122 aaPredicted RBP12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 UBE2KP61086 200 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 ID3Q02535 119 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 CXorf66Q5JRM2 361 aaPredicted RBP12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 BRD3OSQ6XYD6 125 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 FAM71E2Q8N5Q1 922 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 INO80EQ8NBZ0 244 aaPredicted RBP12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 KIAA1456Q9P272 454 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 MBD2Q9UBB5 411 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 NUP50Q9UKX7 468 aa12.18□□□□□ -0.46
TMEM39A-203ENST00000461654 E5RGE8 158 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 TRIM77I1YAP6 450 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 UPK2O00526 184 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 ARPC5O15511 151 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 DEDDO75618 318 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 KBTBD11O94819 623 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 SPDEFO95238 335 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 IFNA17P01571 189 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 SNRNP70P08621 437 aaKnown RBP12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 OR9G9P0C7N8 305 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 C4BPBP20851 252 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 PLGLAQ15195 96 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 TMEM65Q6PI78 240 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 THNSL2Q86YJ6 484 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 PUSL1Q8N0Z8 303 aaKnown RBP12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 DYNAPQ8N1N2 210 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 TEX45Q8NA69 505 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 C17orf50Q8WW18 174 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 MAGT1Q9H0U3 335 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 RCL1Q9Y2P8 373 aaKnown RBP12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 NSG2Q9Y328 171 aa12.17□□□□□ -0.46
TMEM39A-203ENST00000461654 A0A0U1RQK1 487 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms