RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LFNGQ8NES3 379 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 OR4A4PQ8NGN8 299 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 CASTOR1Q8WTX7 329 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 FAM3DQ96BQ1 224 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 ARHGAP5-AS1Q96IT6 56 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 TMEM68Q96MH6 324 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 CLCC1Q96S66 551 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 MGLLQ99685 303 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 ASCL2Q99929 193 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 FAM103A1Q9BTL3 118 aaKnown RBP5.56□□□□□ -1.52
USP54-208ENST00000461520 CCDC90BQ9GZT6 254 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 ACOT13Q9NPJ3 140 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 RDH8Q9NYR8 311 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 RAB22AQ9UL26 194 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 GAB2Q9UQC2 676 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 V9GY05 133 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 DNAH1Q9P2D7 4330 aa5.56□□□□□ -1.52
USP54-208ENST00000461520 TENM2Q9NT68 2774 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 A0A0G2JLM5 398 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 RPS10-NUDT3A0A1W2PQS6 291 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 H3BUA1 57 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 FABP7O15540 132 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 IGHV3-11P01762 117 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 CD3GP09693 182 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 GP9P14770 177 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 SPNP16150 400 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 CRHBPP24387 322 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 LGALS7P47929 136 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 CLDN12P56749 244 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 TPPP2P59282 170 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 PITPNAQ00169 270 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 FABP5Q01469 135 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 FXYD3Q14802 87 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 MOGAT2Q3SYC2 334 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 ARPC1AQ92747 370 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 MS4A10Q96PG2 267 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 OR4C12Q96R67 309 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 CABLES2Q9BTV7 478 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 CENPOQ9BU64 300 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 RANGRFQ9HD47 186 aaPredicted RBP5.55□□□□□ -1.52
USP54-208ENST00000461520 SLC35D1Q9NTN3 355 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 KCNK7Q9Y2U2 307 aa5.55□□□□□ -1.52
USP54-208ENST00000461520 TRBV6-7A0A0A0MS04 114 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 TRAV1-2A0A0B4J238 106 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 CXorf65A6NEN9 183 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 M0R1X1 148 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 PDCD5O14737 125 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 SLC25A17O43808 307 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 CNIH1O95406 144 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 BRI3O95415 125 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 IGLV2-23P01705 113 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 TRGV3P03979 118 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 CRYGBP07316 175 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 FCGR3AP08637 254 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 FRMD6-AS1P0C7T7 363 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 ZP3P21754 424 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 GADD45AP24522 165 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 CBX3Q13185 183 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 TBCEQ15813 527 aaPredicted RBP5.54□□□□□ -1.52
USP54-208ENST00000461520 HES5Q5TA89 166 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 SBSPONQ8IVN8 264 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 POC5Q8NA72 575 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 OR10R2Q8NGX6 335 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 OR10J5Q8NHC4 309 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 GRPEL2Q8TAA5 225 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 RAB3CQ96E17 227 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 OR2D2Q9H210 308 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 MAP6D1Q9H9H5 199 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 ZNF355PQ9NSJ1 428 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 SDHAF2Q9NX18 166 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 STUB1Q9UNE7 303 aa5.54□□□□□ -1.52
USP54-208ENST00000461520 C13orf42A0A1B0GVH6 325 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 METTL21EPA6NDL7 271 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 IFITM5A6NNB3 132 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 A8MZ25 164 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 MFNGO00587 321 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 BET1O15155 118 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 IGLV1-51P01701 117 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 GSTT2P0CG29 244 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 GSTT2BP0CG30 244 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 RRASP10301 218 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 HIST1H1DP16402 221 aaKnown RBP5.53□□□□□ -1.52
USP54-208ENST00000461520 GALP22466 123 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 AADACP22760 399 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 MAP2K4P45985 399 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 PLA2G7Q13093 441 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 ARL6IP1Q15041 203 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 RTL8BQ17RB0 113 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 IGSF11Q5DX21 431 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 CASC10Q5T4H9 136 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 Q6ZS49 121 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 ZNF367Q7RTV3 350 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 OR5T1Q8NG75 326 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 ADTRPQ96IZ2 230 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 HARBI1Q96MB7 349 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 RCHY1Q96PM5 261 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 VCX3BQ9H321 246 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 BLOC1S6Q9UL45 172 aa5.53□□□□□ -1.52
USP54-208ENST00000461520 RBM7Q9Y580 266 aaKnown RBP5.53□□□□□ -1.52
USP54-208ENST00000461520 HYDINQ4G0P3 5121 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms