RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 TSNAXQ99598 290 aaKnown RBP6.98□□□□□ -1.29
SYNE1-214ENST00000454018 COMMD9Q9P000 198 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 KIAA1456Q9P272 454 aa6.98□□□□□ -1.29
SYNE1-214ENST00000454018 TEX13DA0A0J9YY54 714 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-214ENST00000454018 FAM181BA6NEQ2 426 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 CRYM-AS1A6NIL9 109 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 NCBP2LA6PVI3 153 aaKnown RBP6.97□□□□□ -1.29
SYNE1-214ENST00000454018 RAMP3O60896 148 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 NDUFA3O95167 84 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 HPRT1P00492 218 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 CRYBA1P05813 215 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 LGALS7P47929 136 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 UBE2MP61081 183 aaKnown RBP6.97□□□□□ -1.29
SYNE1-214ENST00000454018 IFITM3Q01628 133 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 PRIMA1Q86XR5 153 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 FAM71E2Q8N5Q1 922 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 C5orf56Q8N8D9 126 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 NPBQ8NG41 125 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 ENKURQ8TC29 256 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 AIFM2Q9BRQ8 373 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 RTBDNQ9BSG5 229 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-214ENST00000454018 C20orf85Q9H1P6 137 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 NAA60Q9H7X0 242 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 PLEKHA2Q9HB19 425 aa6.97□□□□□ -1.29
SYNE1-214ENST00000454018 C3orf85A0A1B0GTC6 90 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 FAM240BA0A1B0GVZ2 78 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 RRHO14718 337 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 CREBL2O60519 120 aaPredicted RBP6.96□□□□□ -1.29
SYNE1-214ENST00000454018 HRASP01112 189 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 VSIG10L2P0DP72 767 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 RPA2P15927 270 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 BRWD1-AS2P59051 145 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 DCTN2Q13561 401 aaKnown RBP6.96□□□□□ -1.29
SYNE1-214ENST00000454018 C5orf64Q2M2E5 130 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 VMA21Q3ZAQ7 101 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 TMEM128Q5BJH2 165 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 TMED4Q7Z7H5 227 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 SGPP2Q8IWX5 399 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 Q8N9W7 124 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 NUDT10Q8NFP7 164 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 VSTM2AQ8TAG5 236 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 TMEM230Q96A57 120 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 RNF125Q96EQ8 232 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 GALNT14Q96FL9 552 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 NUDT11Q96G61 164 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 PLSCR3Q9NRY6 295 aa6.96□□□□□ -1.29
SYNE1-214ENST00000454018 PIGBOS1A0A0B4J2F0 54 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 MARCH11A6NNE9 402 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 ARPC1BO15143 372 aaKnown RBP6.96□□□□□ -1.3
SYNE1-214ENST00000454018 SLC25A17O43808 307 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 S1PR2O95136 353 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 NDUFA7O95182 113 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 IGLV2-23P01705 113 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 HLA-DRB1P01911 266 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 TCRBP04435 133 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 SERPINE2P07093 398 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 SAA1P0DJI8 122 aaPredicted RBP6.96□□□□□ -1.3
SYNE1-214ENST00000454018 ANXA3P12429 323 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 NQO2P16083 231 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 AKR1C4P17516 323 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 UCP1P25874 307 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 CNTFRP26992 372 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 F2RL1P55085 397 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 UBE2KP61086 200 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 RAP2BP61225 183 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 ERVK-16P61578 105 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 SRPXP78539 464 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 PLGLAQ15195 96 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 POU2AF1Q16633 256 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 ADAD2Q8NCV1 583 aaKnown RBP6.96□□□□□ -1.3
SYNE1-214ENST00000454018 TP53RKQ96S44 253 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 RASL11BQ9BPW5 248 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 PRSS22Q9GZN4 317 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM222Q9H0R3 208 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 NUDT15Q9NV35 164 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 METTL1Q9UBP6 276 aaKnown RBP6.96□□□□□ -1.3
SYNE1-214ENST00000454018 KCNIP3Q9Y2W7 256 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 NUBP2Q9Y5Y2 271 aa6.96□□□□□ -1.3
SYNE1-214ENST00000454018 KCNAB3O43448 404 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 TSPAN9O75954 239 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 ATG12O94817 140 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 KBTBD11O94819 623 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 PTTG1O95997 202 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 OR5AC1P0C628 307 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 LPAR6P43657 344 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 RAG2P55895 527 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 DHODHQ02127 395 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 PSG5Q15238 335 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 TRIM16LQ309B1 348 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 ZNF585BQ52M93 769 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 NRARPQ7Z6K4 114 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 SLC25A42Q86VD7 318 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 Q8N2B8 174 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 TEX45Q8NA69 505 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 OR4F5Q8NH21 305 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 OR2T6Q8NHC8 308 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 R3HDM4Q96D70 268 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 RBMXL1Q96E39 390 aaKnown RBP6.95□□□□□ -1.3
SYNE1-214ENST00000454018 RITA1Q96K30 269 aa6.95□□□□□ -1.3
SYNE1-214ENST00000454018 SIGLEC9Q9Y336 463 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms