RNA–Protein interactions for RNA: ENST00000428962.2

THBS3-202, Transcript of thrombospondin 3, humanhuman

TSL 2

Gene THBS3, Length 1,833 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-202ENST00000428962 NGBQ9NPG2 151 aa11.28□□□□□ -0.6
THBS3-202ENST00000428962 RPUSD1Q9UJJ7 312 aaKnown RBP11.28□□□□□ -0.6
THBS3-202ENST00000428962 TCF19Q9Y242 345 aa11.28□□□□□ -0.6
THBS3-202ENST00000428962 TANC2Q9HCD6 1990 aa11.28□□□□□ -0.6
THBS3-202ENST00000428962 RAI1Q7Z5J4 1906 aaPredicted RBP11.27□□□□□ -0.6
THBS3-202ENST00000428962 TMEM250H0YL14 139 aa11.27□□□□□ -0.61
THBS3-202ENST00000428962 CDC34P49427 236 aaPredicted RBP11.27□□□□□ -0.61
THBS3-202ENST00000428962 RPS16P62249 146 aaKnown RBP11.27□□□□□ -0.61
THBS3-202ENST00000428962 CCL8P80075 99 aa11.27□□□□□ -0.61
THBS3-202ENST00000428962 MEF2CQ06413 473 aaPredicted RBP11.27□□□□□ -0.61
THBS3-202ENST00000428962 HNF4GQ14541 408 aa11.27□□□□□ -0.61
THBS3-202ENST00000428962 TBR1Q16650 682 aa11.27□□□□□ -0.61
THBS3-202ENST00000428962 ADAM5Q6NVV9 412 aa11.27□□□□□ -0.61
THBS3-202ENST00000428962 VKORC1L1Q8N0U8 176 aa11.27□□□□□ -0.61
THBS3-202ENST00000428962 A0A1W2PPE3 182 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 SMCO3A2RU48 225 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 PCP4L1A6NKN8 68 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 ZNF727A8MUV8 499 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 NDUFB7P17568 137 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 GNG10P50151 68 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 TMPRSS3P57727 454 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 TLE1Q04724 770 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 POU2AF1Q16633 256 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 RTL8BQ17RB0 113 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 OR4A47Q6IF82 309 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 SLC25A48Q6ZT89 311 aaKnown RBP11.26□□□□□ -0.61
THBS3-202ENST00000428962 RAB24Q969Q5 203 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 RHOVQ96L33 236 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 SAP30LQ9HAJ7 183 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 TMEM14BQ9NUH8 114 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 TMEM242Q9NWH2 141 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 SH3BGRL2Q9UJC5 107 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 ANKRD11Q6UB99 2663 aaPredicted RBP11.26□□□□□ -0.61
THBS3-202ENST00000428962 PKD1L2Q7Z442 2459 aa11.26□□□□□ -0.61
THBS3-202ENST00000428962 C5orf52A6NGY3 159 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 SEC14L6B5MCN3 397 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 K7ENP7 123 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 TMPRSS2O15393 492 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 ZZEF1O43149 2961 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 THBDP07204 575 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 OPRK1P41145 380 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 ZNF383Q8NA42 475 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 RAB1CQ92928 201 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 SDF2L1Q9HCN8 221 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 SLC25A10Q9UBX3 287 aaPredicted RBP11.25□□□□□ -0.61
THBS3-202ENST00000428962 NAT8Q9UHE5 227 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 PRNDQ9UKY0 176 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 DSCAMO60469 2012 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 DSCAML1Q8TD84 2053 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 PRRC2CQ9Y520 2896 aaKnown RBP11.25□□□□□ -0.61
THBS3-202ENST00000428962 UBE2CO00762 179 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 CD81P60033 236 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 HSPE1P61604 102 aaKnown RBP11.25□□□□□ -0.61
THBS3-202ENST00000428962 SNRPEP62304 92 aaKnown RBP11.25□□□□□ -0.61
THBS3-202ENST00000428962 ELOBQ15370 118 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 TMEM249Q2WGJ8 235 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 CYP2G1PQ6ZSU1 146 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 LINC00469Q8N7U9 141 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 SMIM7Q9BQ49 75 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 CTDSP1Q9GZU7 261 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 LOC400499M0QZD8 3231 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 CADP27708 2225 aa11.25□□□□□ -0.61
THBS3-202ENST00000428962 DIDO1Q9BTC0 2240 aaKnown RBP11.25□□□□□ -0.61
THBS3-202ENST00000428962 PPIAL4EA0A075B759 164 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 TRAV3A0A0B4J244 114 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 PRSS46E5RG02 174 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 PPIAL4DF5H284 164 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 CLDN34H7C241 214 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 RRHO14718 337 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 KBTBD11O94819 623 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 PPIAL4FP0DN26 164 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 NPY1RP25929 384 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 RPS10P46783 165 aaKnown RBP11.24□□□□□ -0.61
THBS3-202ENST00000428962 RPL31P62899 125 aaKnown RBP11.24□□□□□ -0.61
THBS3-202ENST00000428962 WDR25Q64LD2 544 aaPredicted RBP11.24□□□□□ -0.61
THBS3-202ENST00000428962 C1orf229Q6ZS94 237 aaPredicted RBP11.24□□□□□ -0.61
THBS3-202ENST00000428962 SLC24A4Q8NFF2 622 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 Q8WTZ3 238 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 RND1Q92730 232 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 SNRNP40Q96DI7 357 aaKnown RBP11.24□□□□□ -0.61
THBS3-202ENST00000428962 METTL1Q9UBP6 276 aaKnown RBP11.24□□□□□ -0.61
THBS3-202ENST00000428962 PPIAL4AQ9Y536 164 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 DYSFO75923 2080 aa11.24□□□□□ -0.61
THBS3-202ENST00000428962 HCFC1P51610 2035 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 A0A1W2PPV4 95 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 HMGB3O15347 200 aaKnown RBP11.23□□□□□ -0.61
THBS3-202ENST00000428962 TGOLN2O43493 480 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 S100A8P05109 93 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 UCNP55089 124 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 UTF1Q5T230 341 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 TREML4Q6UXN2 200 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 SLC35D1Q9NTN3 355 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 DCAF16Q9NXF7 216 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 ZNF257Q9Y2Q1 563 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 ZFHX4Q86UP3 3567 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 TMEM178BH3BS89 294 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 RND2P52198 227 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 TMEM241Q24JQ0 296 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 Q8N7P7 452 aa11.23□□□□□ -0.61
THBS3-202ENST00000428962 OR13D1Q8NGV5 346 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms