RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DEFB114Q30KQ6 69 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 NECAP1Q8NC96 275 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 LGALS14Q8TCE9 139 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 OR51E2Q9H255 320 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 PRELID3BQ9Y3B1 194 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 RRP15Q9Y3B9 282 aaKnown RBP8.73□□□□□ -1.01
USP4-204ENST00000416417 HYDINQ4G0P3 5121 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 NOTOA8MTQ0 251 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 TPPPO94811 219 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 KBTBD11O94819 623 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 IFNA6P05013 189 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 CD36P16671 472 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 RPL27AP46776 148 aaKnown RBP8.72□□□□□ -1.01
USP4-204ENST00000416417 GNG2P59768 71 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 MXD1Q05195 221 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 EIF4EBP1Q13541 118 aaPredicted RBP8.72□□□□□ -1.01
USP4-204ENST00000416417 CNIH2Q6PI25 160 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 CLEC19AQ6UXS0 136 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 LINC00322Q6ZN03 302 aaPredicted RBP8.72□□□□□ -1.01
USP4-204ENST00000416417 MFSD4AQ8N468 514 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 GVQW1Q8N7I0 195 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 OR5H6Q8NGV6 325 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 CCDC140Q96MF4 163 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 FANCD2OSQ96PS1 177 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 OR2A7Q96R45 310 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 SRD5A3Q9H8P0 318 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 CCL28Q9NRJ3 127 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 BLOC1S6Q9UL45 172 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 MRPS7Q9Y2R9 242 aaKnown RBP8.72□□□□□ -1.01
USP4-204ENST00000416417 DNAH1Q9P2D7 4330 aa8.72□□□□□ -1.01
USP4-204ENST00000416417 ZNF320A2RRD8 509 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 DPPA5A6NC42 116 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 OR11H12B2RN74 326 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 AIREO43918 545 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 SPARTQ8N0X7 666 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 PUSL1Q8N0Z8 303 aaKnown RBP8.71□□□□□ -1.01
USP4-204ENST00000416417 OR4S2Q8NH73 311 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 TMEM167AQ8TBQ9 72 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 SECTM1Q8WVN6 248 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 ANXA10Q9UJ72 324 aa8.71□□□□□ -1.01
USP4-204ENST00000416417 TNCP24821 2201 aa8.71□□□□□ -1.02
USP4-204ENST00000416417 IGHV3-35A0A0C4DH35 117 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 CGB1A6NKQ9 187 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 CREBL2O60519 120 aaPredicted RBP8.7□□□□□ -1.02
USP4-204ENST00000416417 GGCTO75223 188 aaKnown RBP8.7□□□□□ -1.02
USP4-204ENST00000416417 CTXN2P0C2S0 81 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 RPA2P15927 270 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 ARL3P36405 182 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 KIR2DS2P43631 304 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 UBE2UQ5VVX9 321 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 SFXN4Q6P4A7 337 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 OR2K2Q8NGT1 345 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 KCTD12Q96CX2 325 aaKnown RBP8.7□□□□□ -1.02
USP4-204ENST00000416417 DCSTAMPQ9H295 470 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 VCX3BQ9H321 246 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 SLC2A9Q9NRM0 540 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 SLC2A8Q9NY64 477 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 ZNF257Q9Y2Q1 563 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 TRAV18A0A075B6X5 111 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 TRAV3A0A0B4J244 114 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 MEIS3P1A6NDR6 274 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 MFSD2BA6NFX1 497 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 NPIPB5A8MRT5 1133 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 SCAF4O95104 1147 aaKnown RBP8.7□□□□□ -1.02
USP4-204ENST00000416417 ZNF735P0CB33 412 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 PSMB6P28072 239 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 FCGR2CP31995 323 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 SDC2P34741 201 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 HSPA13P48723 471 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 ARL6IP1Q15041 203 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 SLC25A42Q86VD7 318 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 SLC25A38Q96DW6 304 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 HSD17B10Q99714 261 aaKnown RBP8.7□□□□□ -1.02
USP4-204ENST00000416417 RHBDL2Q9NX52 303 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 MLXQ9UH92 298 aa8.7□□□□□ -1.02
USP4-204ENST00000416417 BIRC6Q9NR09 4857 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 TMEM213A2RRL7 107 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 ERICH4A6NGS2 130 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 SULT1C2O00338 296 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 GALP22466 123 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 CBLN1P23435 193 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 FGF9P31371 208 aaPredicted RBP8.69□□□□□ -1.02
USP4-204ENST00000416417 FXYD4P59646 89 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 ARPC4P59998 168 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 GABARAPL2P60520 117 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 TM4SF20Q53R12 229 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 IDNKQ5T6J7 187 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 ZNF773Q6PK81 442 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 UNQ9165/PRO28630Q6UXU0 137 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 TMEM61Q8N0U2 210 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 SPAG16Q8N0X2 631 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 UXS1Q8NBZ7 420 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 BEST4Q8NFU0 473 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 CENPOQ9BU64 300 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 HRASLSQ9HDD0 168 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 RAB26Q9ULW5 256 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 SSR3Q9UNL2 185 aa8.69□□□□□ -1.02
USP4-204ENST00000416417 LOC100506127A0A0U1RQW1 187 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 SLC22A5O76082 557 aa8.68□□□□□ -1.02
USP4-204ENST00000416417 CRYGCP07315 174 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms