RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 RAG2P55895 527 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 OR10A3P58181 314 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 ARPC4P59998 168 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 GNB1P62873 340 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 KLRD1Q13241 179 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 MPV17LQ2QL34 196 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 SLC22A6Q4U2R8 563 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 MINOS1Q5TGZ0 78 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 OR51T1Q8NGJ9 327 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 OR13C5Q8NGS8 318 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 MALSU1Q96EH3 234 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 AKR1E2Q96JD6 320 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 UHRF2Q96PU4 802 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 DERL3Q96Q80 235 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 CLEC7AQ9BXN2 247 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 PPA2Q9H2U2 334 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 IL36GQ9NZH8 169 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 ZNRD1Q9P1U0 126 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 MRPS28Q9Y2Q9 187 aaKnown RBP5.02□□□□□ -1.61
USP40-202ENST00000409945 AMMECR1Q9Y4X0 333 aaPredicted RBP5.02□□□□□ -1.61
USP40-202ENST00000409945 MINOS1-NBL1R4GNA1 71 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 MEIKINA0A087WXM9 373 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 MDFIC2A0A1B0GVS7 189 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ODAMA1E959 279 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 IFITM5A6NNB3 132 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 CENPXA8MT69 81 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 MCRIP1C9JLW8 97 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ORC5O43913 435 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 SCGB2A1O75556 95 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 FCN3O75636 299 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 EIF4EP06730 217 aaKnown RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 CALCBP10092 127 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 HTR1DP28221 377 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 BRS3P32247 399 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 GLP1RP43220 463 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 NPBWR1P48145 328 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 AESQ08117 197 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ATXN7L3Q14CW9 347 aaPredicted RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 NHLRC3Q5JS37 347 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 UBE2NLQ5JXB2 153 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ATAD3CQ5T2N8 411 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 RSBN1Q5VWQ0 802 aaPredicted RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 ZNF57Q68EA5 555 aaPredicted RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 NOTCH2NLQ7Z3S9 236 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 OR4S1Q8NGB4 309 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 C15orf40Q8WUR7 153 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 TNFRSF14Q92956 283 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ZNF486Q96H40 463 aaPredicted RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 SSX3Q99909 188 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 C7orf50Q9BRJ6 194 aaKnown RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 CHIAQ9BZP6 476 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 TMEM133Q9H2Q1 129 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 NUDT15Q9NV35 164 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ZNF221Q9UK13 617 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ETV7Q9Y603 341 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 V9GY05 133 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 IGKV1-12A0A0C4DH73 117 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 TMEM30CPA0ZSE6 113 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 SRRM4A7MD48 611 aaKnown RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 LEUTXA8MZ59 168 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 F8WDY8 70 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 H3BUX3 64 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 CA11O75493 328 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 CRTAPO75718 401 aaPredicted RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 NDUFA7O95182 113 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 IGKV1D-12P01611 117 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 IGFBP3P17936 291 aaPredicted RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 GZMHP20718 246 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 CDK2P24941 298 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 HLA-DMAP28067 261 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 OR3A4PP47883 348 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 RBM11P57052 281 aaKnown RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 CD300CQ08708 224 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 FAM189A2Q15884 450 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 GLIPR1L1Q6UWM5 242 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 HEPN1Q6WQI6 88 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 ASCL4Q6XD76 172 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 TPRX1Q8N7U7 411 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 OR11H6Q8NGC7 330 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 OR10A7Q8NGE5 316 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 OR4C13Q8NGP0 309 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 OR10K1Q8NGX5 313 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 OR6F1Q8NGZ6 308 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 RGP1Q92546 391 aaPredicted RBP5.01□□□□□ -1.61
USP40-202ENST00000409945 C5orf30Q96GV9 206 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 MARVELD1Q9BSK0 173 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 TREM1Q9NP99 234 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 COPZ2Q9P299 210 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 MMP24Q9Y5R2 645 aa5.01□□□□□ -1.61
USP40-202ENST00000409945 IGHV2-26A0A0B4J1V2 119 aa5□□□□□ -1.61
USP40-202ENST00000409945 CLPSL1A2RUU4 121 aa5□□□□□ -1.61
USP40-202ENST00000409945 PIN1P1O15428 100 aa5□□□□□ -1.61
USP40-202ENST00000409945 GSTZ1O43708 216 aaPredicted RBP5□□□□□ -1.61
USP40-202ENST00000409945 NFYBP25208 207 aa5□□□□□ -1.61
USP40-202ENST00000409945 IL3RAP26951 378 aa5□□□□□ -1.61
USP40-202ENST00000409945 SLC6A1P30531 599 aa5□□□□□ -1.61
USP40-202ENST00000409945 GLIPR1P48060 266 aa5□□□□□ -1.61
USP40-202ENST00000409945 MRPS10P82664 201 aaKnown RBP5□□□□□ -1.61
USP40-202ENST00000409945 SSX2Q16385 188 aa5□□□□□ -1.61
USP40-202ENST00000409945 TATDN3Q17R31 274 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms