RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 INTS1Q8N201 2190 aaKnown RBP10.13□□□□□ -0.79
HMGB1-206ENST00000405805 TEX50A0A1B0GTY4 177 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 H3BVH4 76 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 NDUFB4O95168 129 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 ARR3P36575 388 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 MPLP40238 635 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 TMEM54Q969K7 222 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 ZDHHC16Q969W1 377 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 POLDIP2Q9Y2S7 368 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 CCL25O15444 150 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 CA1P00915 261 aaPredicted RBP10.13□□□□□ -0.79
HMGB1-206ENST00000405805 CDKN1BP46527 198 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 MEF2BQ02080 365 aaPredicted RBP10.13□□□□□ -0.79
HMGB1-206ENST00000405805 ZNF506Q5JVG8 444 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 OR51G1Q8NGK1 321 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 CT55Q8WUE5 264 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 TRIB1Q96RU8 372 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 HSPB8Q9UJY1 196 aa10.13□□□□□ -0.79
HMGB1-206ENST00000405805 ZG16O60844 167 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 SCGB1C2P0DMR2 95 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 NTF4P34130 210 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 CLDND2Q8NHS1 167 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-206ENST00000405805 A0A1B0GW15 77 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 WNT9BO14905 357 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 SPINT2O43291 252 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 PPIHO43447 177 aaKnown RBP10.12□□□□□ -0.79
HMGB1-206ENST00000405805 LILRA1O75019 489 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 HTR1DP28221 377 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 CEACAM21Q3KPI0 293 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 MDP1Q86V88 176 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 H1FOOQ8IZA3 346 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-206ENST00000405805 TAF15Q92804 592 aaKnown RBP eCLIP10.12□□□□□ -0.79
HMGB1-206ENST00000405805 EML5Q05BV3 1969 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 HIST1H1EP10412 219 aaKnown RBP10.12□□□□□ -0.79
HMGB1-206ENST00000405805 SRIP30626 198 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 TRAT1Q6PIZ9 186 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 LYPD6Q86Y78 171 aa10.12□□□□□ -0.79
HMGB1-206ENST00000405805 F11RQ9Y624 299 aaKnown RBP10.12□□□□□ -0.79
HMGB1-206ENST00000405805 OR2H2O95918 312 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 CD46P15529 392 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 GCSHP23434 173 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 CFPP27918 469 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 NMUP48645 174 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 RPEL1Q2QD12 228 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 STPG4Q8N801 248 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 ZNF391Q9UJN7 358 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 SLC45A2Q9UMX9 530 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 GTF3C1Q12789 2109 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 COL6A6A6NMZ7 2263 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 A0A1B0GU03 582 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 MT-CO3P00414 261 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 HOXA6P31267 233 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 FAM53AQ6NSI3 398 aaPredicted RBP10.11□□□□□ -0.79
HMGB1-206ENST00000405805 OR4D5Q8NGN0 318 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 SRSF8Q9BRL6 282 aaKnown RBP10.11□□□□□ -0.79
HMGB1-206ENST00000405805 WDR54Q9H977 334 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 CREBBPQ92793 2442 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 PIGBOS1A0A0B4J2F0 54 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 KCNMB1Q16558 191 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 Q6ZRM9 215 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 LEAP2Q969E1 77 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 PMCHL2Q9BQD1 86 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 DCTN5Q9BTE1 182 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 DEPPQ9NTK1 212 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 SERTM2A0A1B0GWG4 89 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 H0Y980 276 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 SELENOTP62341 195 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 GAGE1Q13065 139 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 OR5A2Q8NGI9 324 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 TWSG1Q9GZX9 223 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 SPCS1Q9Y6A9 102 aa10.11□□□□□ -0.79
HMGB1-206ENST00000405805 ATP1A1-AS1Q5TC04 95 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 C20orf204Q6ZNR8 217 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 FADS6Q8N9I5 356 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 SPTBN5Q9NRC6 3674 aaKnown RBP10.1□□□□□ -0.79
HMGB1-206ENST00000405805 TNFSF15O95150 251 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 OR8B8Q15620 311 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 LCN12Q6JVE5 192 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 OR2Z1Q8NG97 314 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 SLC25A40Q8TBP6 338 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 CLUHP3Q96NS8 147 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 CRIM1Q9NZV1 1036 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 PINLYPA6NC86 204 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 C1QTNF9BB2RNN3 333 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 UCP1P25874 307 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 MRPS11P82912 194 aaKnown RBP10.1□□□□□ -0.79
HMGB1-206ENST00000405805 MPV17L2Q567V2 206 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 GCSAMLQ5JQS6 135 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 DRAM1Q8N682 238 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 ORAOV1Q8WV07 137 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 TMEM140Q9NV12 185 aa10.1□□□□□ -0.79
HMGB1-206ENST00000405805 IGLV3-12A0A075B6K2 115 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 KLRC4-KLRK1H3BQV0 150 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 S1PR2O95136 353 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 MEOX1P50221 254 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 IL15RAQ13261 267 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 PMCHL1Q16048 86 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 SPSB3Q6PJ21 355 aa10.09□□□□□ -0.79
HMGB1-206ENST00000405805 SIGLEC12Q96PQ1 595 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms