RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 C1orf194Q5T5A4 169 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 C9orf172C9J069 976 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 KITLGP21583 273 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 MEOX1P50221 254 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 MOB1BQ7L9L4 216 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 HEYLQ9NQ87 328 aaPredicted RBP17.41■□□□□ 0.38
CTCF-202ENST00000401394 ABCA1O95477 2261 aa17.41■□□□□ 0.38
CTCF-202ENST00000401394 M0R143 59 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 GATA2P23769 480 aaPredicted RBP17.4■□□□□ 0.38
CTCF-202ENST00000401394 ZNF90Q03938 601 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 KLF14Q8TD94 323 aaPredicted RBP17.4■□□□□ 0.38
CTCF-202ENST00000401394 PARD6AQ9NPB6 346 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 MBP02144 154 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 FXYD3Q14802 87 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 SPRNQ5BIV9 151 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 FBXW9Q5XUX1 488 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 SPRR3Q9UBC9 169 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 WDR83OSQ9Y284 106 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 IGHV3OR15-7A0A075B7D8 119 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 MDFIC2A0A1B0GVS7 189 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 RNF212BA8MTL3 300 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 ZNF134P52741 427 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 RPL31P62899 125 aaKnown RBP17.4■□□□□ 0.38
CTCF-202ENST00000401394 C21orf62-AS1Q17RA5 79 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 TBC1D28Q2M2D7 210 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 DIRC2Q96SL1 478 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 POLDIP2Q9Y2S7 368 aa17.4■□□□□ 0.38
CTCF-202ENST00000401394 HINT2Q9BX68 163 aa17.39■□□□□ 0.37
CTCF-202ENST00000401394 B4GALT7Q9UBV7 327 aa17.39■□□□□ 0.37
CTCF-202ENST00000401394 VENTXO95231 258 aa17.39■□□□□ 0.37
CTCF-202ENST00000401394 CATR1Q13166 79 aa17.39■□□□□ 0.37
CTCF-202ENST00000401394 ATP6V1FQ16864 119 aa17.39■□□□□ 0.37
CTCF-202ENST00000401394 ZCCHC14Q8WYQ9 949 aaKnown RBP17.39■□□□□ 0.37
CTCF-202ENST00000401394 RAB4AP20338 218 aa17.38■□□□□ 0.37
CTCF-202ENST00000401394 PRAMEF5Q5TYX0 476 aa17.38■□□□□ 0.37
CTCF-202ENST00000401394 CDX2Q99626 313 aaPredicted RBP17.38■□□□□ 0.37
CTCF-202ENST00000401394 MRPL18Q9H0U6 180 aaKnown RBP17.38■□□□□ 0.37
CTCF-202ENST00000401394 IGHV1-2P23083 117 aa17.38■□□□□ 0.37
CTCF-202ENST00000401394 CCKARP32238 428 aa17.38■□□□□ 0.37
CTCF-202ENST00000401394 TRIP6Q15654 476 aaKnown RBP17.38■□□□□ 0.37
CTCF-202ENST00000401394 VWC2Q2TAL6 325 aa17.38■□□□□ 0.37
CTCF-202ENST00000401394 PDLIM3Q53GG5 364 aaPredicted RBP17.38■□□□□ 0.37
CTCF-202ENST00000401394 FAM201AQ5SY85 155 aa17.38■□□□□ 0.37
CTCF-202ENST00000401394 RYDENQ9NUL5 291 aaKnown RBP17.38■□□□□ 0.37
CTCF-202ENST00000401394 DOLPP1Q86YN1 238 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 TMEM208Q9BTX3 173 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 GGTLC1Q9BX51 225 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 TMEM106BQ9NUM4 274 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 MRPS18CQ9Y3D5 142 aaKnown RBP17.37■□□□□ 0.37
CTCF-202ENST00000401394 C17orf112F2Z3M2 114 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 M0R1X1 148 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 RAB29O14966 203 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 CGAP01215 116 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 DCAF10Q5QP82 559 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 TPTE2P1Q5T6R2 138 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 CD177Q8N6Q3 437 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 OR10G8Q8NGN5 311 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 RNASE7Q9H1E1 156 aaKnown RBP17.37■□□□□ 0.37
CTCF-202ENST00000401394 KIR2DL5BA0A0G2JN68 375 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 KIR2DL5BA0A0G2JPC4 375 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 LCN2P80188 198 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 MLANAQ16655 118 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 KIR2DL5AQ8N109 375 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 NHLRC2Q8NBF2 726 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 ZNRD1Q9P1U0 126 aa17.37■□□□□ 0.37
CTCF-202ENST00000401394 TACC2O95359 2948 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 OOEPA6NGQ2 149 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 YPEL1O60688 119 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 CA1P00915 261 aaPredicted RBP17.36■□□□□ 0.37
CTCF-202ENST00000401394 LBHQ53QV2 105 aaPredicted RBP17.36■□□□□ 0.37
CTCF-202ENST00000401394 Q6ZVH6 145 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 OR8I2Q8N0Y5 310 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 ST6GALNAC3Q8NDV1 305 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 YPEL2Q96QA6 119 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 COLQQ9Y215 455 aaPredicted RBP17.36■□□□□ 0.37
CTCF-202ENST00000401394 GVINP1Q7Z2Y8 2422 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 PCNX2A6NKB5 2137 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 TMEM210A6NLX4 147 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 FCN1O00602 326 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 OR10J1P30954 320 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 WDR82Q6UXN9 313 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 RCHY1Q96PM5 261 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 GNG12Q9UBI6 72 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 PLCE1Q9P212 2302 aa17.36■□□□□ 0.37
CTCF-202ENST00000401394 PDE6DO43924 150 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 ARSJQ5FYB0 599 aaPredicted RBP17.35■□□□□ 0.37
CTCF-202ENST00000401394 BAGE3Q86Y29 109 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 BAGE2Q86Y30 109 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 ZNRF1Q8ND25 227 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 OR4P4Q8NGL7 312 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 OR1L6Q8NGR2 347 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 TMEM68Q96MH6 324 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 EP300Q09472 2414 aaPredicted RBP17.35■□□□□ 0.37
CTCF-202ENST00000401394 TMPRSS2O15393 492 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 CRISP2P16562 243 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 TNFSF10P50591 281 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 KRTDAPP60985 99 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 TRA2AQ13595 282 aaKnown RBP eCLIP17.35■□□□□ 0.37
CTCF-202ENST00000401394 ACP7Q6ZNF0 438 aa17.35■□□□□ 0.37
CTCF-202ENST00000401394 ATOH7Q8N100 152 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms