RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ST6GALNAC6Q969X2 333 aa20.54■□□□□ 0.88
SHOX2-201ENST00000389589 RSG1Q9BU20 258 aa20.54■□□□□ 0.88
SHOX2-201ENST00000389589 CHODLQ9H9P2 273 aa20.54■□□□□ 0.88
SHOX2-201ENST00000389589 C10orf91Q5T1B1 145 aa20.53■□□□□ 0.88
SHOX2-201ENST00000389589 MALRD1Q5VYJ5 2156 aa20.53■□□□□ 0.88
SHOX2-201ENST00000389589 H2AFB1P0C5Y9 115 aa20.52■□□□□ 0.88
SHOX2-201ENST00000389589 VWC2Q2TAL6 325 aa20.52■□□□□ 0.88
SHOX2-201ENST00000389589 PCGF1Q9BSM1 259 aa20.52■□□□□ 0.88
SHOX2-201ENST00000389589 BET1LQ9NYM9 111 aa20.52■□□□□ 0.88
SHOX2-201ENST00000389589 PPIAL4CA0A0B4J2A2 164 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 H7C2Y5 167 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 UPK2O00526 184 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 LY6HO94772 140 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 PPIAL4GP0DN37 164 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 HOXA1P49639 335 aaPredicted RBP20.52■□□□□ 0.87
SHOX2-201ENST00000389589 TMEM177Q53S58 311 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 PDPNQ86YL7 162 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 NABP2Q9BQ15 211 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 PBDC1Q9BVG4 233 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 SEC11CQ9BY50 192 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 ZNF257Q9Y2Q1 563 aa20.52■□□□□ 0.87
SHOX2-201ENST00000389589 hCG_1809904A0A1W2PP81 198 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 A0A1W2PPE2 198 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 A0A1W2PPR1 153 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 A0A1W2PR64 198 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 A0A1W2PRV1 198 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 F8W036 122 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 IFNA10P01566 189 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 PRRX1P54821 245 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 DEFA5Q01523 94 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 PEA15Q15121 130 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 CENPVQ7Z7K6 275 aaPredicted RBP20.51■□□□□ 0.87
SHOX2-201ENST00000389589 FKBP11Q9NYL4 201 aa20.51■□□□□ 0.87
SHOX2-201ENST00000389589 CARHSP1Q9Y2V2 147 aaKnown RBP20.51■□□□□ 0.87
SHOX2-201ENST00000389589 IGFBP2P18065 325 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 RAB2AP61019 212 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 GUK1Q16774 197 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 TGIF2LXQ8IUE1 241 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 ENY2Q9NPA8 101 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 OR51B2Q9Y5P1 312 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 HRNRQ86YZ3 2850 aaPredicted RBP20.5■□□□□ 0.87
SHOX2-201ENST00000389589 A0A1B0GW64 132 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 HBE1P02100 147 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 M6PRP20645 277 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 LHX4Q969G2 390 aa20.5■□□□□ 0.87
SHOX2-201ENST00000389589 FLYWCH2Q96CP2 140 aaKnown RBP20.5■□□□□ 0.87
SHOX2-201ENST00000389589 SRRM4A7MD48 611 aaKnown RBP20.49■□□□□ 0.87
SHOX2-201ENST00000389589 C19orf84I3L1E1 186 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 ADCYAP1P18509 176 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 REG1BP48304 166 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 SVBPQ8N300 66 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 LY6G5BQ8NDX9 201 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 OR4C13Q8NGP0 309 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 HARBI1Q96MB7 349 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 UBTD1Q9HAC8 227 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 LRBAP50851 2863 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 IGHV2-26A0A0B4J1V2 119 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 MC5RP33032 325 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 RAB13P51153 203 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 GGACTQ9BVM4 153 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 WASHC3Q9Y3C0 194 aa20.49■□□□□ 0.87
SHOX2-201ENST00000389589 KBTBD11O94819 623 aa20.48■□□□□ 0.87
SHOX2-201ENST00000389589 LIPFP07098 398 aa20.48■□□□□ 0.87
SHOX2-201ENST00000389589 RAB11AP62491 216 aa20.48■□□□□ 0.87
SHOX2-201ENST00000389589 SPSB3Q6PJ21 355 aa20.48■□□□□ 0.87
SHOX2-201ENST00000389589 SCRT1Q9BWW7 348 aa20.48■□□□□ 0.87
SHOX2-201ENST00000389589 CLEC7AQ9BXN2 247 aa20.48■□□□□ 0.87
SHOX2-201ENST00000389589 MS4A7Q9GZW8 240 aaPredicted RBP20.48■□□□□ 0.87
SHOX2-201ENST00000389589 PATZ1Q9HBE1 687 aaKnown RBP20.48■□□□□ 0.87
SHOX2-201ENST00000389589 ACACBO00763 2458 aa20.48■□□□□ 0.87
SHOX2-201ENST00000389589 SAA1P0DJI8 122 aaPredicted RBP20.47■□□□□ 0.87
SHOX2-201ENST00000389589 EIF5A2Q9GZV4 153 aaKnown RBP20.47■□□□□ 0.87
SHOX2-201ENST00000389589 TRAV1-1A0A0B4J248 108 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 SFTA3P0C7M3 94 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 FGF7P21781 194 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 RPS16P62249 146 aaKnown RBP20.47■□□□□ 0.87
SHOX2-201ENST00000389589 TMEM41BQ5BJD5 291 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 ETV3LQ6ZN32 361 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 BEND2Q8NDZ0 799 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 SMDT1Q9H4I9 107 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 RPRMQ9NS64 109 aa20.47■□□□□ 0.87
SHOX2-201ENST00000389589 A6NNC1 897 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 FAM157AC9JC47 383 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 IGLV1-47P01700 117 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 DIAPH2-AS1Q14236 149 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 HLA-DRB5Q30154 266 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 SP5Q6BEB4 398 aaPredicted RBP20.46■□□□□ 0.87
SHOX2-201ENST00000389589 OR4A5Q8NH83 315 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 VSTM2AQ8TAG5 236 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 SFT2D1Q8WV19 159 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 KIAA1456Q9P272 454 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 F12P00748 615 aaPredicted RBP20.46■□□□□ 0.87
SHOX2-201ENST00000389589 MDKP21741 143 aaPredicted RBP20.46■□□□□ 0.87
SHOX2-201ENST00000389589 PRCDQ00LT1 54 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 OR5B3Q8NH48 314 aa20.46■□□□□ 0.87
SHOX2-201ENST00000389589 RBMXL1Q96E39 390 aaKnown RBP20.46■□□□□ 0.87
SHOX2-201ENST00000389589 A0A1B0GV50 99 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 RRHO14718 337 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 CD1BP29016 333 aa20.44■□□□□ 0.86
SHOX2-201ENST00000389589 CDKN1AP38936 164 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms