RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 SPSB4Q96A44 273 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 DDA1Q9BW61 102 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 NPIPB8E9PQR5 432 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 NPIPB9F8W1W9 429 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 NPIPB7O75200 414 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 SRIP30626 198 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 ACSF3Q4G176 576 aaPredicted RBP8.72□□□□□ -1.01
CLIP1-202ENST00000358808 TCRBV4S1A1TA0A5B7 111 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 FAM209AQ5JX71 171 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 SPOCK3Q9BQ16 436 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 FBXL7Q9UJT9 491 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 ZNF318Q5VUA4 2279 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 CRYBB3P26998 211 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 UNC119Q13432 240 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 SAPCD1Q5SSQ6 148 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 LDLRAD2Q5SZI1 272 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 CD300LDQ6UXZ3 194 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 PPP1R27Q86WC6 154 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 OR13A1Q8NGR1 328 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 PMCHL2Q9BQD1 86 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 ELOVL5Q9NYP7 299 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 METRNQ9UJH8 293 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 SOD3P08294 240 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 FOXL2P58012 376 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 WDR82Q6UXN9 313 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 CLEC19AQ6UXS0 136 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 LIMS2Q7Z4I7 341 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 ZNF721Q8TF20 911 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 RARRES2Q99969 163 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 AICDAQ9GZX7 198 aa8.72□□□□□ -1.01
CLIP1-202ENST00000358808 LDLRAD4O15165 306 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 IGHV3-11P01762 117 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 HSPE1P61604 102 aaKnown RBP8.71□□□□□ -1.01
CLIP1-202ENST00000358808 ASCL4Q6XD76 172 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 VKORC1L1Q8N0U8 176 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 MTURNQ8N3F0 131 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 CST9LQ9H4G1 147 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 KLK13Q9UKR3 277 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 ATP5LO75964 103 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 APOBEC3AP31941 199 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-202ENST00000358808 ATP1A1-AS1Q5TC04 95 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 C8orf46Q8TAG6 207 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 PRDM6Q9NQX0 595 aa8.71□□□□□ -1.01
CLIP1-202ENST00000358808 SHROOM3Q8TF72 1996 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 PTP4A3O75365 173 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 IGKV1D-33P01593 117 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 IGKV1-33P01594 117 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 HMGA2P52926 109 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 S100A7L2Q5SY68 101 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 LINC00305Q7Z4B0 112 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 FOXD3Q9UJU5 478 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-202ENST00000358808 A0A1W2PP11 408 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 LOC390937A0A1W2PQ73 354 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 ZNF729A6NN14 1252 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-202ENST00000358808 SBF1O95248 1867 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 ICAM4Q14773 271 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 ATOH7Q8N100 152 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 OR11H4Q8NGC9 324 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 NPIPB3Q92617 1050 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 ZNF414Q96IQ9 312 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 REPIN1Q9BWE0 567 aaKnown RBP8.71□□□□□ -1.02
CLIP1-202ENST00000358808 UQCR10Q9UDW1 63 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 SEC16AO15027 2179 aa8.71□□□□□ -1.02
CLIP1-202ENST00000358808 IGHV4-39P01824 125 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 IL11P20809 199 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 NRTNQ99748 197 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 PILRBQ9UKJ0 227 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 V9GYH0 126 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 SMIM6P0DI80 62 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 GPR183P32249 361 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 FAM27BQ5VT28 67 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 C11orf44Q8N8P7 122 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 SLC25A15Q9Y619 301 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 MUC21A0A0G2JKD1 596 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 MUC21A0A140T8X8 626 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 NDUFA3O95167 84 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 HSPB1P04792 205 aaKnown RBP8.7□□□□□ -1.02
CLIP1-202ENST00000358808 RPL32P62910 135 aaKnown RBP8.7□□□□□ -1.02
CLIP1-202ENST00000358808 TGIF1Q15583 401 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 MUC21Q5SSG8 566 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 C9orf62Q8N4C0 152 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 JPT1Q9UK76 154 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 F8WEM9 126 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 KIAA1644Q3SXP7 199 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 MRPL32Q9BYC8 188 aaKnown RBP8.7□□□□□ -1.02
CLIP1-202ENST00000358808 MIXL1Q9H2W2 232 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 FOXA2Q9Y261 457 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-202ENST00000358808 PGLYRP1O75594 196 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-202ENST00000358808 PAX1P15863 534 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 LEPP41159 167 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 EFNB1P98172 346 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 PAX2Q02962 417 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 COLCA1Q6ZS62 124 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 OR2K2Q8NGT1 345 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 FAM206AQ9NX38 181 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 KCNK7Q9Y2U2 307 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 PLXNA1Q9UIW2 1896 aa8.7□□□□□ -1.02
CLIP1-202ENST00000358808 PCM1Q15154 2024 aa8.69□□□□□ -1.02
CLIP1-202ENST00000358808 PLA2G10O15496 165 aa8.69□□□□□ -1.02
CLIP1-202ENST00000358808 ZG16O60844 167 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms