RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 MC5RP33032 325 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 OR4D5Q8NGN0 318 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 IL19Q9UHD0 177 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 TOPAZ1Q8N9V7 1692 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 PLA2G10O15496 165 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 S100A8P05109 93 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 CXCL2P19875 107 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 PCMT1P22061 227 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 TRAV5A0A0B4J249 113 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 ERGP11308 486 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 COL8A2P25067 703 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 TSPAN7P41732 249 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 DDA1Q9BW61 102 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 CRHP06850 196 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 FAM57AQ8TBR7 257 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 MRPL18Q9H0U6 180 aaKnown RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 PIN1P1O15428 100 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 PMCHL1Q16048 86 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 KHDC3LQ587J8 217 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 RTN4RL2Q86UN3 420 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 AQP10Q96PS8 301 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 SPAG8Q99932 426 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-202ENST00000357409 MYO7AQ13402 2215 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 NPIPB11E5RHQ5 1161 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 ZNF688P0C7X2 276 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 CD59P13987 128 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 V9GYH0 126 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 SNRPD3P62318 126 aaKnown RBP6.19□□□□□ -1.42
VPS13A-202ENST00000357409 CYB561D1Q8N8Q1 229 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 BTAF1O14981 1849 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 PTP4A3O75365 173 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 IGHV4-39P01824 125 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 P2RY4P51582 365 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 TMEM174Q8WUU8 243 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 IGHV1-18A0A0C4DH31 117 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 DEFB130BP0DP73 79 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 DEFB130AP0DP74 79 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 LYPD2Q6UXB3 125 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 DNM1P46Q6ZS02 220 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 MIR17HGQ75NE6 70 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 MRPL13Q9BYD1 178 aaKnown RBP6.19□□□□□ -1.42
VPS13A-202ENST00000357409 MYH4Q9Y623 1939 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 C1orf53Q5VUE5 145 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 LRP5O75197 1615 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 H3BUX3 64 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 GCM2O75603 506 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-202ENST00000357409 C12orf54Q6X4T0 127 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 BPESC1Q9GZL8 116 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 TMEM191AQ9H0A3 160 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 WDR54Q9H977 334 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 CCDC88AQ3V6T2 1871 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 DUXBA0A1W2PPF3 345 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 RPL15P61313 204 aaKnown RBP6.19□□□□□ -1.42
VPS13A-202ENST00000357409 ACTL10Q5JWF8 245 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 BPIFA4PQ86YQ2 179 aa6.19□□□□□ -1.42
VPS13A-202ENST00000357409 NFAM1Q8NET5 270 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-202ENST00000357409 SCO2A0A1W2PP80 73 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 NPIPB13A6NJU9 1138 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 NPIPB5A8MRT5 1133 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 NPIPB4C9JG80 1138 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 COL5A1-AS1Q5SY13 56 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 C8orf82Q6P1X6 216 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 C1orf122Q6ZSJ8 110 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 DPM3Q9P2X0 92 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 ELOA3CA0A087WX78 387 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 PGPEP1LA6NFU8 196 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 TDGF1P3P51864 188 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 HMGA2P52926 109 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 IQCJQ1A5X6 159 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 SIGIRRQ6IA17 410 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 ZNF474Q6S9Z5 364 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 GTSCR1Q86UQ5 136 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 GATAD1Q8WUU5 269 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 NDUFS7O75251 213 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 CGB7P0DN87 165 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 PYYP10082 97 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 TCF15Q12870 199 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 TAF15Q92804 592 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 SFRP2Q96HF1 295 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 SCN9AQ15858 1988 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 IGKV1D-42A0A075B6H8 117 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 C17orf100A8MU93 164 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 TMEM183BQ1AE95 376 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 ZNF672Q499Z4 452 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 TEX45Q8NA69 505 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 OR9G1Q8NH87 305 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 NUP98P52948 1817 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 ECM29Q5VYK3 1845 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 PAPPAQ13219 1627 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 MUC1P15941 1255 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 HSPE1P61604 102 aaKnown RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 CLRN3Q8NCR9 226 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 LSM10Q969L4 123 aaKnown RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 B9A039 149 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 CLPSL2Q6UWE3 100 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 TTC9CQ8N5M4 171 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 WDR34Q96EX3 536 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 SRIP30626 198 aa6.18□□□□□ -1.42
VPS13A-202ENST00000357409 DMRTC2Q8IXT2 367 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-202ENST00000357409 A0A087X0M5 115 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms