RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 DOLPP1Q86YN1 238 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 CISD2Q8N5K1 135 aaKnown RBP15.96■□□□□ 0.15
COL9A3-201ENST00000343916 FAM222BQ8WU58 562 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 TMEM140Q9NV12 185 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 Q9UFV3 132 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 PKDREJQ9NTG1 2253 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 TANC2Q9HCD6 1990 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 KBTBD11-OT1A0A1B0GTJ5 212 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 RRHO14718 337 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 GATCO43716 136 aaKnown RBP15.96■□□□□ 0.15
COL9A3-201ENST00000343916 ERVK-16P61578 105 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 RELBQ01201 579 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 GCSAMLQ5JQS6 135 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 ZNF709Q8N972 641 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 RAB24Q969Q5 203 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 GAFA1Q96PS6 74 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 GFOD1Q9NXC2 390 aa15.96■□□□□ 0.15
COL9A3-201ENST00000343916 CTXND1A0A1B0GTU2 59 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 SMCO3A2RU48 225 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 MMP23AO75900 390 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 IFNA1P01562 189 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 GNG10P50151 68 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 MEF2BQ02080 365 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-201ENST00000343916 C4orf17Q53FE4 359 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 Q8N7P7 452 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 DDB2Q92466 427 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 P2RX4Q99571 388 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 HEYLQ9NQ87 328 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-201ENST00000343916 TP53TG5Q9Y2B4 290 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 MKRN2OSH3BPM6 223 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 MDKP21741 143 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-201ENST00000343916 CD1BP29016 333 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 ZNF600Q6ZNG1 722 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 WFDC8Q8IUA0 241 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 LYG1Q8N1E2 194 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 ABHD12Q8N2K0 398 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 SDSLQ96GA7 329 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 SDF2L1Q9HCN8 221 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 SIRT7Q9NRC8 400 aa15.95■□□□□ 0.14
COL9A3-201ENST00000343916 TRGV10A0A0A0MS01 117 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 PPP1R2P9O14990 202 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 SPCS3P61009 180 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 WDR25Q64LD2 544 aaPredicted RBP15.94■□□□□ 0.14
COL9A3-201ENST00000343916 ZNRD1Q9P1U0 126 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 CXorf65A6NEN9 183 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 SEC14L6B5MCN3 397 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 RBFOX2O43251 390 aaKnown RBP eCLIP15.94■□□□□ 0.144e-13■■■■□ 19.8
COL9A3-201ENST00000343916 TRGC1P0CF51 173 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 AARDQ4LEZ3 155 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 HIST3H2BBQ8N257 126 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 RHOVQ96L33 236 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 SSX3Q99909 188 aa15.94■□□□□ 0.14
COL9A3-201ENST00000343916 MBP02144 154 aa15.93■□□□□ 0.14
COL9A3-201ENST00000343916 FRZBQ92765 325 aa15.93■□□□□ 0.14
COL9A3-201ENST00000343916 RPUSD4Q96CM3 377 aaKnown RBP15.93■□□□□ 0.14
COL9A3-201ENST00000343916 ACTR3CQ9C0K3 210 aaPredicted RBP15.93■□□□□ 0.14
COL9A3-201ENST00000343916 VDAC2P45880 294 aaPredicted RBP15.93■□□□□ 0.14
COL9A3-201ENST00000343916 RAB7AP51149 207 aa15.93■□□□□ 0.14
COL9A3-201ENST00000343916 ABHD5Q8WTS1 349 aa15.93■□□□□ 0.14
COL9A3-201ENST00000343916 TMEM170AQ8WVE7 144 aa15.93■□□□□ 0.14
COL9A3-201ENST00000343916 FAM210BQ96KR6 192 aa15.93■□□□□ 0.14
COL9A3-201ENST00000343916 SMIM7Q9BQ49 75 aa15.93■□□□□ 0.14
COL9A3-201ENST00000343916 TRAV38-1A0A0B4J264 116 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 PRRG2O14669 202 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 TMPRSS2O15393 492 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 GFRA3O60609 400 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 TNFSF4P23510 183 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 GPX4P36969 197 aaPredicted RBP15.92■□□□□ 0.14
COL9A3-201ENST00000343916 TDGF1P3P51864 188 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 DEFA6Q01524 100 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 PNRC1Q12796 327 aaPredicted RBP15.92■□□□□ 0.14
COL9A3-201ENST00000343916 TMEM108Q6UXF1 575 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 OR4S2Q8NH73 311 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 PRDM13Q9H4Q3 707 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 CEP295Q9C0D2 2601 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 C17orf112F2Z3M2 114 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 FABP4P15090 132 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 MYOD1P15172 320 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 PSMB3P49720 205 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 ZNF788Q6ZQV5 615 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 TCF19Q9Y242 345 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 WDR83OSQ9Y284 106 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 TNCP24821 2201 aa15.92■□□□□ 0.14
COL9A3-201ENST00000343916 DPRXA6NFQ7 191 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 FAM90A9PA6NNJ1 464 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 B4DEV8 164 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 C16orf97H3BN30 126 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 MRPS11P82912 194 aaKnown RBP15.91■□□□□ 0.14
COL9A3-201ENST00000343916 OR4F5Q8NH21 305 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 OR4F4Q96R69 305 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 PAGE4O60829 102 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 OR4A47Q6IF82 309 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 TREML4Q6UXN2 200 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 C1orf87Q8N0U7 546 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 Q8NA96 180 aa15.91■□□□□ 0.14
COL9A3-201ENST00000343916 OR4A8P0C604 315 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 IRF2P14316 349 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 CDC34P49427 236 aaPredicted RBP15.9■□□□□ 0.14
COL9A3-201ENST00000343916 BSPH1Q075Z2 132 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 PMS2P11Q13670 270 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms