RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 MCFD2Q8NI22 146 aa15.46■□□□□ 0.07
SYNE2-201ENST00000341472 GIMAP1Q8WWP7 306 aa15.46■□□□□ 0.07
SYNE2-201ENST00000341472 CMTM3Q96MX0 182 aa15.46■□□□□ 0.07
SYNE2-201ENST00000341472 GPHA2Q96T91 129 aa15.46■□□□□ 0.07
SYNE2-201ENST00000341472 SLC5A7Q9GZV3 580 aa15.46■□□□□ 0.07
SYNE2-201ENST00000341472 PPYP01298 95 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 GP9P14770 177 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 RHOGP84095 191 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 DEFA5Q01523 94 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 ATP5G2Q06055 141 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 UBE2NLQ5JXB2 153 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 C10orf55Q5SWW7 151 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 SLC25A42Q86VD7 318 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 TTC9CQ8N5M4 171 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 SAMD12Q8N8I0 201 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 OR5AP2Q8NGF4 316 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 TMEM167AQ8TBQ9 72 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 AIFM2Q9BRQ8 373 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 NXF2Q9GZY0 626 aaKnown RBP15.45■□□□□ 0.06
SYNE2-201ENST00000341472 PTTG2Q9NZH5 202 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 SORL1Q92673 2214 aa15.45■□□□□ 0.06
SYNE2-201ENST00000341472 MEIS3P1A6NDR6 274 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 TNFSF12O43508 249 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 RBMXL2O75526 392 aaKnown RBP15.44■□□□□ 0.06
SYNE2-201ENST00000341472 PRH1P02810 166 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 PUSL1Q8N0Z8 303 aaKnown RBP15.44■□□□□ 0.06
SYNE2-201ENST00000341472 SNAPC3Q92966 411 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 WWC2-AS2Q96NR7 200 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 RSRP1Q9BUV0 290 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 AKIP1Q9NQ31 210 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 IFT46Q9NQC8 304 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 COMMD3Q9UBI1 195 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 U3KQK5 164 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 COL7A1Q02388 2944 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 TENM3Q9P273 2699 aa15.44■□□□□ 0.06
SYNE2-201ENST00000341472 FAM223BA6NKX1 122 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 KBTBD11O94819 623 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 MAS1LP35410 378 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 SYNJ2BPP57105 145 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 FXYD4P59646 89 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 TMEM69Q5SWH9 247 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 FAM223AQ8IWN6 122 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 SPAG16Q8N0X2 631 aa15.43■□□□□ 0.06
SYNE2-201ENST00000341472 TNCP24821 2201 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 TRBV9A0A0B4J1U6 114 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 HMX3A6NHT5 357 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 IGLV1-51P01701 117 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 TRBV12-3P01733 135 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 IL6RP08887 468 aaPredicted RBP15.42■□□□□ 0.06
SYNE2-201ENST00000341472 RPL27AP46776 148 aaKnown RBP15.42■□□□□ 0.06
SYNE2-201ENST00000341472 TAS2R20P59543 309 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 ZNF45Q02386 682 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 RPEL1Q2QD12 228 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 SSX9Q7RTT3 188 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 NECAP1Q8NC96 275 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 OR9G4Q8NGQ1 327 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 FYTTD1Q96QD9 318 aaKnown RBP15.42■□□□□ 0.06
SYNE2-201ENST00000341472 C6orf62Q9GZU0 229 aaPredicted RBP15.42■□□□□ 0.06
SYNE2-201ENST00000341472 ADAM30Q9UKF2 790 aa15.42■□□□□ 0.06
SYNE2-201ENST00000341472 SULT1C2O00338 296 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 RGS5O15539 181 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 RBFOX2O43251 390 aaKnown RBP eCLIP15.41■□□□□ 0.06
SYNE2-201ENST00000341472 S100A5P33763 92 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 PRSS3P35030 304 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 HERV-K104P61576 105 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 CATR1Q13166 79 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 DHRS11Q6UWP2 260 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 IL34Q6ZMJ4 242 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 LINC00299Q6ZSB3 139 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 HAPLN4Q86UW8 402 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 SLC2A9Q9NRM0 540 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 EHFQ9NZC4 300 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 ZNF257Q9Y2Q1 563 aa15.41■□□□□ 0.06
SYNE2-201ENST00000341472 TEX22C9J3V5 150 aa15.4■□□□□ 0.06
SYNE2-201ENST00000341472 OR2J3O76001 311 aa15.4■□□□□ 0.06
SYNE2-201ENST00000341472 APOA1P02647 267 aa15.4■□□□□ 0.06
SYNE2-201ENST00000341472 RFX2P48378 723 aa15.4■□□□□ 0.06
SYNE2-201ENST00000341472 RPL8P62917 257 aaKnown RBP15.4■□□□□ 0.06
SYNE2-201ENST00000341472 OR4A5Q8NH83 315 aa15.4■□□□□ 0.06
SYNE2-201ENST00000341472 BORCS5Q969J3 196 aa15.4■□□□□ 0.06
SYNE2-201ENST00000341472 NPIPB5A8MRT5 1133 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 E7EUB6 86 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 CTDSP2O14595 271 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 HPRT1P00492 218 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 PMP2P02689 132 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 ZNF735P0CB33 412 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 HLA-GP17693 338 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 EXOSC2Q13868 293 aaKnown RBP15.39■□□□□ 0.05
SYNE2-201ENST00000341472 ZNF818PQ6ZRF7 136 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 TMEM17Q86X19 198 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 CD300LFQ8TDQ1 290 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 HRASLSQ9HDD0 168 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 BET1LQ9NYM9 111 aa15.39■□□□□ 0.05
SYNE2-201ENST00000341472 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.38■□□□□ 0.05
SYNE2-201ENST00000341472 H0Y980 276 aa15.38■□□□□ 0.05
SYNE2-201ENST00000341472 HPGDSO60760 199 aa15.38■□□□□ 0.05
SYNE2-201ENST00000341472 NQO2P16083 231 aa15.38■□□□□ 0.05
SYNE2-201ENST00000341472 NAT1P18440 290 aa15.38■□□□□ 0.05
SYNE2-201ENST00000341472 GNRHRP30968 328 aa15.38■□□□□ 0.05
SYNE2-201ENST00000341472 TAS2R31P59538 309 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms