RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CST4P01036 141 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 GPX4P36969 197 aaPredicted RBP6.96□□□□□ -1.3
HMGB1-203ENST00000341423 DEFB131AP59861 70 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 SAXO1Q8IYX7 474 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 NUDCD2Q8WVJ2 157 aa6.96□□□□□ -1.3
HMGB1-203ENST00000341423 RPL36A-HNRNPH2H7BZ11 118 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 GAS1P54826 345 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 OR4C5Q8NGB2 326 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 INMT-MINDY4F8WBC2 141 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 OR2C1O95371 312 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 PSG1P11464 419 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 RGS21Q2M5E4 152 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 SIAH3Q8IW03 269 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.95□□□□□ -1.3
HMGB1-203ENST00000341423 OR52I1Q8NGK6 324 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 SRSF12Q8WXF0 261 aaKnown RBP6.95□□□□□ -1.3
HMGB1-203ENST00000341423 TEX37Q96LM6 180 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 RNF5Q99942 180 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 RSG1Q9BU20 258 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 TRAV5A0A0B4J249 113 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 RBM11P57052 281 aaKnown RBP6.95□□□□□ -1.3
HMGB1-203ENST00000341423 MLLT11Q13015 90 aaPredicted RBP6.95□□□□□ -1.3
HMGB1-203ENST00000341423 AQP3Q92482 292 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 KCNS1Q96KK3 526 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 PUS1Q9Y606 427 aaKnown RBP eCLIP6.95□□□□□ -1.3
HMGB1-203ENST00000341423 SSSCA1O60232 199 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 VENTXO95231 258 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 CA2P00918 260 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 SMR3AQ99954 134 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 C20orf141Q9NUB4 165 aa6.95□□□□□ -1.3
HMGB1-203ENST00000341423 TAAR5O14804 337 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 IGLL1P15814 213 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 TCTEX1D4Q5JR98 221 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 Q6ZWC4 215 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 DAZ1Q9NQZ3 744 aaKnown RBP6.94□□□□□ -1.3
HMGB1-203ENST00000341423 CACNG5Q9UF02 275 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 SETXQ7Z333 2677 aaKnown RBP6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FGF16O43320 207 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 SELLP14151 372 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 ELK1P19419 428 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 TDGF1P3P51864 188 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 MFAP2P55001 183 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 SLC24A4Q8NFF2 622 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 OPN4Q9UHM6 478 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 S4R3C0 116 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 SNRPBP14678 240 aaKnown RBP6.94□□□□□ -1.3
HMGB1-203ENST00000341423 M6PRP20645 277 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 SSTR5P35346 364 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 PRSS48Q7RTY5 328 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 TMEM144Q7Z5S9 345 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 PXT1Q8NFP0 134 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 PGLYRP3Q96LB9 341 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 NEURL2Q9BR09 285 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 IGLV3-32A0A0A0MS00 114 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.94□□□□□ -1.3
HMGB1-203ENST00000341423 TRBV7-1A0A0A6YYK4 115 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A10PA6NDY2 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A18PA6NE21 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A16PA6NEW6 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A20PA6NIJ5 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A8PA6NJQ4 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A7PA6NKC0 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 C17orf51A8MQB3 221 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A22PA8MWA6 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A12PA8MX19 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A5PA8MXJ8 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A23PA8MXZ1 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A15PP0C7V4 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A13PP0C7W8 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A14PP0C7W9 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 FAM90A24PP0C7X0 464 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 OR10J1P30954 320 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 HS3ST6Q96QI5 342 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 SLC25A21Q9BQT8 299 aaPredicted RBP6.94□□□□□ -1.3
HMGB1-203ENST00000341423 LOC285556D6RIA3 1793 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 C20orf202A1L168 122 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 OVOL3O00110 214 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 CFPP27918 469 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 RPL35P42766 123 aaKnown RBP6.94□□□□□ -1.3
HMGB1-203ENST00000341423 CD200R1LQ6Q8B3 271 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 SGK494Q96LW2 274 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 WWC2-AS2Q96NR7 200 aa6.94□□□□□ -1.3
HMGB1-203ENST00000341423 DIMT1Q9UNQ2 313 aaKnown RBP6.94□□□□□ -1.3
HMGB1-203ENST00000341423 CDK5R1Q15078 307 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 HLA-DRB5Q30154 266 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 SMIM19Q96E16 107 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 SDF2L1Q9HCN8 221 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 MFSD2BA6NFX1 497 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 UBE2CO00762 179 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 DCTDP32321 178 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 CX3CL1P78423 397 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 C15orf32Q32M92 178 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 BATF3Q9NR55 127 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 A0A1B0GUL6 1792 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 S100A9P06702 114 aaKnown RBP6.93□□□□□ -1.3
HMGB1-203ENST00000341423 C2orf76Q3KRA6 126 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 HIST2H3PS2Q5TEC6 136 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 CROCCQ5TZA2 2017 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 MAVSQ7Z434 540 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 OR51G1Q8NGK1 321 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms