RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 A0A1B0GVG6 124 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 PPP1R2P9O14990 202 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 TFF1P04155 84 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 S100A12P80511 92 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 NSUN5P1Q3KNT7 163 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 DBX1A6NMT0 343 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 TIMM23O14925 209 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 MLNRO43193 412 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 ZNF137PP52743 207 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 GAMTQ14353 236 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 HLA-DRB5Q30154 266 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 CLDND2Q8NHS1 167 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 PAXXQ9BUH6 204 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 UFC1Q9Y3C8 167 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 DLX6P56179 175 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 IZUMO4Q1ZYL8 232 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 BSCL2Q96G97 398 aaPredicted RBP8.44□□□□□ -1.06
USP54-201ENST00000339859 RNF5Q99942 180 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 ATP6V1G1O75348 118 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 SAT2Q96F10 170 aaPredicted RBP8.44□□□□□ -1.06
USP54-201ENST00000339859 PSMB11A5LHX3 300 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 CGAP01215 116 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 KLRD1Q13241 179 aa8.44□□□□□ -1.06
USP54-201ENST00000339859 DEDDO75618 318 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 DHRS11Q6UWP2 260 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 RAB19A4D1S5 217 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 EAF1Q96JC9 268 aaPredicted RBP8.43□□□□□ -1.06
USP54-201ENST00000339859 TMEM56-RWDD3S4R434 201 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 CACNA1EQ15878 2313 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 H7BYZ3 331 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 ERVFC1-1P60608 527 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 C5orf66Q9H5L9 145 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 IGHV2-70DA0A0C4DH43 119 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 SHISA9B4DS77 424 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 RRHO14718 337 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 LINC00869P0C866 280 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 FAM89BQ8N5H3 189 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 PHYHIPLQ96FC7 376 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 SMIM8Q96KF7 97 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 NPDC1Q9NQX5 325 aaPredicted RBP8.43□□□□□ -1.06
USP54-201ENST00000339859 PXMP4Q9Y6I8 212 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 SIAH2O43255 324 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 SAMD10Q9BYL1 202 aa8.43□□□□□ -1.06
USP54-201ENST00000339859 LY6HO94772 140 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 TSPOP30536 169 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 FCGR2BP31994 310 aaPredicted RBP8.42□□□□□ -1.06
USP54-201ENST00000339859 PRB3Q04118 309 aaPredicted RBP8.42□□□□□ -1.06
USP54-201ENST00000339859 ANKRD55Q3KP44 614 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 SAMD13Q5VXD3 122 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 PLA2G10O15496 165 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 MYOD1P15172 320 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 DLK1P80370 383 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 RRN3P1Q2M238 152 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 LYPD2Q6UXB3 125 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 BPIFA4PQ86YQ2 179 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 C3orf56Q8N813 242 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 Q8NA96 180 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 C17orf98A8MV24 154 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 C11orf91Q3C1V1 193 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 ZNF843Q8N446 348 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 TVP23CQ96ET8 276 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 SAV1Q9H4B6 383 aaPredicted RBP8.42□□□□□ -1.06
USP54-201ENST00000339859 IGKV1-27A0A075B6S5 117 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 CA2P00918 260 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 MPZP25189 248 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 PAX5Q02548 391 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 FHL1Q13642 323 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 TMEM78Q5T7P6 136 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 FAM71F2Q6NXP2 309 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 GSX2Q9BZM3 304 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 CDC42EP3Q9UKI2 254 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 RNF114Q9Y508 228 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 F5H697 171 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 SAA1P0DJI8 122 aaPredicted RBP8.42□□□□□ -1.06
USP54-201ENST00000339859 RPL7P18124 248 aaKnown RBP8.42□□□□□ -1.06
USP54-201ENST00000339859 BRD3OSQ6XYD6 125 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 C21orf62Q9NYP8 219 aa8.42□□□□□ -1.06
USP54-201ENST00000339859 FOXA2Q9Y261 457 aaPredicted RBP8.42□□□□□ -1.06
USP54-201ENST00000339859 ZNF705GA8MUZ8 300 aaPredicted RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 H3BUX3 64 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 UPK2O00526 184 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 CD99P14209 185 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 DOCK9Q9BZ29 2069 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 IGKV1D-17A0A075B6S4 117 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 IGHV1-3A0A0C4DH29 117 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 IGKV1-12A0A0C4DH73 117 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 IGKV1D-12P01611 117 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 CR1LQ2VPA4 569 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 RNASEH2CQ8TDP1 164 aaKnown RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 NKX6-2Q9C056 277 aaPredicted RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 CACNA1CQ13936 2221 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 TRAV41A0A0B4J266 112 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 BUB1B-PAK6H3BSN5 160 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 PRTN3P24158 256 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 UBE2E1P51965 193 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 PLAURQ03405 335 aa8.41□□□□□ -1.06
USP54-201ENST00000339859 LYRM2Q9NU23 88 aaPredicted RBP8.41□□□□□ -1.06
USP54-201ENST00000339859 RBFOX2O43251 390 aaKnown RBP eCLIP8.41□□□□□ -1.06
USP54-201ENST00000339859 HTN1P15515 57 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms