RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 LHX4Q969G2 390 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 ZC4H2Q9NQZ6 224 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 SIRT7Q9NRC8 400 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 AMMECR1Q9Y4X0 333 aaPredicted RBP13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 TXNL1O43396 289 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 FCGR3BO75015 233 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 APOA2P02652 100 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 HKR1P10072 659 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 MC5RP33032 325 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 BRWD1-AS2P59051 145 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 RPL23AP62750 156 aaKnown RBP13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 BAXQ07812 192 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 KLRD1Q13241 179 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 POU2AF1Q16633 256 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 AARDQ4LEZ3 155 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 RPL39P5Q59GN2 51 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 VMO1Q7Z5L0 202 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 PNKDQ8N490 385 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 C11orf42Q8N5U0 333 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 OR13D1Q8NGV5 346 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 TAF15Q92804 592 aaKnown RBP eCLIP13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 C19orf24Q9BVV8 132 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 CACNG5Q9UF02 275 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 WSB1Q9Y6I7 421 aa13.29□□□□□ -0.28
PDLIM1-201ENST00000329399 MARCH11A6NNE9 402 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 RAMP3O60896 148 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 JTBO76095 146 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 S1PR2O95136 353 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 GAPDHP04406 335 aaKnown RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 GNG10P50151 68 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 RAB14P61106 215 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 DEFB112Q30KQ8 113 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 EIF5AL1Q6IS14 154 aaKnown RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 FOXRED2Q8IWF2 684 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 PIP4P2Q8N4L2 257 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 TEX29Q8N6K0 151 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 DMBX1Q8NFW5 382 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 TMEM158Q8WZ71 300 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 R3HDM4Q96D70 268 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 CIB3Q96Q77 187 aaPredicted RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 CLEC7AQ9BXN2 247 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 MS4A7Q9GZW8 240 aaPredicted RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 C11orf1Q9H5F2 150 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 UNKLQ9H9P5 680 aaKnown RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 LYRM2Q9NU23 88 aaPredicted RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 RCL1Q9Y2P8 373 aaKnown RBP13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 KPTNQ9Y664 436 aa13.28□□□□□ -0.28
PDLIM1-201ENST00000329399 A0A1W2PRD5 423 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 A0A1W2PRF3 423 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 A0A1W2PRM7 423 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 RNASEK-C17orf49H0YIS7 233 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 SYNGR2O43760 224 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 KRASP01116 189 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 TPT1P13693 172 aaKnown RBP13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 RAB13P51153 203 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 ZNF816Q0VGE8 651 aaPredicted RBP13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 HCP5Q6MZN7 132 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 C9orf139Q6ZV77 190 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 OR2C3Q8N628 320 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 OR52E5Q8NH55 327 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 OSR1Q8TAX0 266 aaPredicted RBP13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 LRRC20Q8TCA0 184 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 ZNF418Q8TF45 676 aaPredicted RBP13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 SCARB1Q8WTV0 552 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 LEAP2Q969E1 77 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 ST6GALNAC6Q969X2 333 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 SMIM8Q96KF7 97 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 HSPB7Q9UBY9 170 aa13.27□□□□□ -0.29
PDLIM1-201ENST00000329399 FGF2P09038 288 aa13.26□□□□□ -0.29
PDLIM1-201ENST00000329399 MIDNQ504T8 468 aa13.26□□□□□ -0.29
PDLIM1-201ENST00000329399 CXorf66Q5JRM2 361 aaPredicted RBP13.26□□□□□ -0.29
PDLIM1-201ENST00000329399 PDPNQ86YL7 162 aa13.26□□□□□ -0.29
PDLIM1-201ENST00000329399 OR5AN1Q8NGI8 311 aa13.26□□□□□ -0.29
PDLIM1-201ENST00000329399 ZNF471Q9BX82 626 aaPredicted RBP13.26□□□□□ -0.29
PDLIM1-201ENST00000329399 BORCS7-ASMTA0A0B4J1R7 106 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 IGHV2-26A0A0B4J1V2 119 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 IGHV1-69DA0A0B4J2H0 117 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 A0A0G2JRQ6 117 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 CHST1O43916 411 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 IGLV1-47P01700 117 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 IGHV1-69P01742 117 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 CT45A6P0DMU7 189 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 CT45A5P0DMU8 189 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 CT45A7P0DMV0 189 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 PRTN3P24158 256 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 G6PCP35575 357 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 POLR2GP62487 172 aaKnown RBP eCLIP13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 EXOSC2Q13868 293 aaKnown RBP13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 PDLIM3Q53GG5 364 aaPredicted RBP13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 Q6ZRM9 215 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 ZNF383Q8NA42 475 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 ST8SIA2Q92186 375 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 SLC35D1Q9NTN3 355 aa13.25□□□□□ -0.29
PDLIM1-201ENST00000329399 A0A0U1RQK1 487 aa13.24□□□□□ -0.29
PDLIM1-201ENST00000329399 A0A1W2PPE3 182 aa13.24□□□□□ -0.29
PDLIM1-201ENST00000329399 DNAJC9-AS1A6NH13 148 aa13.24□□□□□ -0.29
PDLIM1-201ENST00000329399 IGHV3-7P01780 117 aa13.24□□□□□ -0.29
PDLIM1-201ENST00000329399 TNFRSF9Q07011 255 aa13.24□□□□□ -0.29
PDLIM1-201ENST00000329399 HLA-DRB5Q30154 266 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms