RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 GPR183P32249 361 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 MNX1P50219 401 aaPredicted RBP12.33□□□□□ -0.44
COL7A1-201ENST00000328333 MRPS18BQ9Y676 258 aaKnown RBP12.33□□□□□ -0.44
COL7A1-201ENST00000328333 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.33□□□□□ -0.44
COL7A1-201ENST00000328333 ZIC1Q15915 447 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 CLDND2Q8NHS1 167 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 DDB2Q92466 427 aa12.33□□□□□ -0.44
COL7A1-201ENST00000328333 TRBV20OR9-2A0A075B6H5 130 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 TRAV9-2A0A087WT02 112 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 TRGV8A0A0C4DH27 118 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 CX3CL1P78423 397 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 POC1AQ8NBT0 407 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 SMPXQ9UHP9 88 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 A0A0G2JMZ2 1700 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 LRRC37A2A6NM11 1700 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 LRRC37AA6NMS7 1700 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 RPL27AP46776 148 aaKnown RBP12.32□□□□□ -0.44
COL7A1-201ENST00000328333 KRTCAP3Q53RY4 240 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 CHCHD1Q96BP2 118 aaKnown RBP12.32□□□□□ -0.44
COL7A1-201ENST00000328333 PLPPR2Q96GM1 343 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 OR10J3Q5JRS4 329 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 BEX4Q9NWD9 120 aaPredicted RBP12.32□□□□□ -0.44
COL7A1-201ENST00000328333 PCDH15Q96QU1 1955 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 ECSCRQ19T08 205 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 PGPEP1Q9NXJ5 209 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 YBX2Q9Y2T7 364 aaKnown RBP12.32□□□□□ -0.44
COL7A1-201ENST00000328333 DMRTC1Q5HYR2 192 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 WIPI1Q5MNZ9 446 aaPredicted RBP12.32□□□□□ -0.44
COL7A1-201ENST00000328333 CYSLTR1Q9Y271 337 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 FSCN3Q9NQT6 498 aa12.32□□□□□ -0.44
COL7A1-201ENST00000328333 TMSB15BA0A087X1C1 80 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 GRIFINA4D1Z8 144 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 TMIGD3P0DMS9 266 aaPredicted RBP12.31□□□□□ -0.44
COL7A1-201ENST00000328333 P2RY4P51582 365 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 CKS1BP61024 79 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 LINC01555Q8NAE3 123 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 GPR146Q96CH1 333 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 RCC1LQ96I51 464 aaKnown RBP12.31□□□□□ -0.44
COL7A1-201ENST00000328333 RAX2Q96IS3 184 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 LINC00470Q9BZP3 86 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 HTN1P15515 57 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 ID4P47928 161 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 TBR1Q16650 682 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 NPCDR1Q9BY65 106 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 GNB1LQ9BYB4 327 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 LOC105371267A0A1B0GV96 52 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 C1QL1O75973 258 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 RRHO14718 337 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 BGLAPP02818 100 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 TMEM160Q9NX00 188 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 CSPG4Q6UVK1 2322 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 SOSTQ9BQB4 213 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 RASL11AQ6T310 242 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 CCL4L1Q8NHW4 92 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 MFAP4P55083 255 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 GAGE2BQ13066 116 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 GAGE2EQ4V326 116 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 PLPPR1Q8TBJ4 325 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 NXT2Q9NPJ8 142 aaKnown RBP12.31□□□□□ -0.44
COL7A1-201ENST00000328333 GAGE2DQ9UEU5 116 aa12.31□□□□□ -0.44
COL7A1-201ENST00000328333 RNF182Q8N6D2 247 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 SPAG8Q99932 426 aaPredicted RBP12.3□□□□□ -0.44
COL7A1-201ENST00000328333 PAX1P15863 534 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 CNTFRP26992 372 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 CTSSP25774 331 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 DEFB109BQ30KR1 87 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 BIVMQ86UB2 503 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 FAM157AC9JC47 383 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 SNAI3Q3KNW1 292 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 PRR13Q9NZ81 148 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 IFITM3Q01628 133 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 HSD52Q0P140 79 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 GCSAMLQ5JQS6 135 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 ATP5L2Q7Z4Y8 100 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 GPX1P07203 203 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 LIMS1P48059 325 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 CT83Q5H943 113 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 TMEM170BQ5T4T1 132 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 RASL10BQ96S79 203 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 TRAV8-6A0A0B4J262 113 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 LIFP15018 202 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 ZNF56Q15929 161 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 GAGE13Q4V321 117 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 CTGFP29279 349 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 NUTF2P61970 127 aaKnown RBP12.3□□□□□ -0.44
COL7A1-201ENST00000328333 MIC13Q5XKP0 118 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 CBLN3Q6UW01 205 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 SRSF12Q8WXF0 261 aaKnown RBP12.3□□□□□ -0.44
COL7A1-201ENST00000328333 TMEM106BQ9NUM4 274 aa12.3□□□□□ -0.44
COL7A1-201ENST00000328333 SIP14410 1827 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 HSPE1P61604 102 aaKnown RBP12.29□□□□□ -0.44
COL7A1-201ENST00000328333 LDLRAD2Q5SZI1 272 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 IZUMO1RA6ND01 250 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 A8MWV9 139 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 EFNB2P52799 333 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 PSG6Q00889 435 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 ACSF3Q4G176 576 aaPredicted RBP12.29□□□□□ -0.44
COL7A1-201ENST00000328333 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.29□□□□□ -0.44
COL7A1-201ENST00000328333 ORAOV1Q8WV07 137 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 RPP21Q9H633 154 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms