RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 C11orf42Q8N5U0 333 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 OR13A1Q8NGR1 328 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 HSD17B10Q99714 261 aaKnown RBP11.17□□□□□ -0.62
SKA3-202ENST00000314759 METRNQ9UJH8 293 aa11.17□□□□□ -0.62
SKA3-202ENST00000314759 RRHO14718 337 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 CER1O95813 267 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 CRISP2P16562 243 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 TIMP3P35625 211 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 MPV17P39210 176 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 PAFAH1B2P68402 229 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 GABRA6Q16445 453 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 HLA-DRB5Q30154 266 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 FAM103A1Q9BTL3 118 aaKnown RBP11.16□□□□□ -0.62
SKA3-202ENST00000314759 MRPL18Q9H0U6 180 aaKnown RBP11.16□□□□□ -0.62
SKA3-202ENST00000314759 OBP2BQ9NPH6 170 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 PROP1O75360 226 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 STAG3L2P0CL84 134 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 STAG3L3P0CL85 134 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 OPRK1P41145 380 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 MRPL49Q13405 166 aaKnown RBP11.16□□□□□ -0.62
SKA3-202ENST00000314759 MIC13Q5XKP0 118 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 OR5AU1Q8NGC0 362 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 MGST2Q99735 147 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 FBXL7Q9UJT9 491 aa11.16□□□□□ -0.62
SKA3-202ENST00000314759 GNG10P50151 68 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 MEOX1P50221 254 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 KRTCAP3Q53RY4 240 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 BAGE3Q86Y29 109 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 BAGE2Q86Y30 109 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 WDR31Q8NA23 367 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 SPRY4Q9C004 299 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 CHRNB4P30926 498 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 ZNF90Q03938 601 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 ACP7Q6ZNF0 438 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 OR10G8Q8NGN5 311 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 KLF14Q8TD94 323 aaPredicted RBP11.15□□□□□ -0.62
SKA3-202ENST00000314759 DCTN5Q9BTE1 182 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 SAMD10Q9BYL1 202 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 MS4A5Q9H3V2 200 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 FOXJ2Q9P0K8 574 aa11.15□□□□□ -0.62
SKA3-202ENST00000314759 AQP7O14520 342 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 MPDU1O75352 247 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 LTC4SQ16873 150 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 AARDQ4LEZ3 155 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 PDLIM3Q53GG5 364 aaPredicted RBP11.15□□□□□ -0.63
SKA3-202ENST00000314759 COL5A1-AS1Q5SY13 56 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 STPG4Q8N801 248 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 Q8N976 141 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 PLPPR2Q96GM1 343 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 TXNDC17Q9BRA2 123 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 GGTLC1Q9BX51 225 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 DEFB127Q9H1M4 99 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 ABI3Q9P2A4 366 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 ZFP30Q9Y2G7 519 aa11.15□□□□□ -0.63
SKA3-202ENST00000314759 YTHDF2Q9Y5A9 579 aaKnown RBP11.15□□□□□ -0.63
SKA3-202ENST00000314759 COL6A3P12111 3177 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 C9orf172C9J069 976 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 PRSS46E5RG02 174 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 K7EN84 100 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 FCGR3BO75015 233 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 NDUFB8O95169 186 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 CXorf1O96002 111 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 DUTP33316 252 aaKnown RBP11.14□□□□□ -0.63
SKA3-202ENST00000314759 KRTDAPP60985 99 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 PEAR1Q5VY43 1037 aaPredicted RBP11.14□□□□□ -0.63
SKA3-202ENST00000314759 VKORC1L1Q8N0U8 176 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 Q8TCH9 128 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 PRR14LQ5THK1 2151 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 PTPRBP23467 1997 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 PRRC2CQ9Y520 2896 aaKnown RBP11.14□□□□□ -0.63
SKA3-202ENST00000314759 HCFC1P51610 2035 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 ESDP10768 282 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 ZNF718Q3SXZ3 478 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 PRAMEF6Q5VXH4 476 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 Q6ZVH6 145 aa11.14□□□□□ -0.63
SKA3-202ENST00000314759 HEYLQ9NQ87 328 aaPredicted RBP11.14□□□□□ -0.63
SKA3-202ENST00000314759 SP1P08047 785 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 TDGF1P13385 188 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 VDAC2P45880 294 aaPredicted RBP11.13□□□□□ -0.63
SKA3-202ENST00000314759 IER3P46695 156 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 PRAMEF5Q5TYX0 476 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 WDR82Q6UXN9 313 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 ABHD12Q8N2K0 398 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 PRR7Q8TB68 274 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 C1orf159Q96HA4 380 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 LRFN3Q9BTN0 628 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 COL27A1Q8IZC6 1860 aaPredicted RBP11.13□□□□□ -0.63
SKA3-202ENST00000314759 TMEM265A0A087WTH1 108 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 C15orf65H3BRN8 121 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 LYZL6O75951 148 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 IGHV1-2P23083 117 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 ACP1P24666 158 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 TMPRSS3P57727 454 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 RANP62826 216 aaKnown RBP11.13□□□□□ -0.63
SKA3-202ENST00000314759 RPL31P62899 125 aaKnown RBP11.13□□□□□ -0.63
SKA3-202ENST00000314759 ANKRD39Q53RE8 183 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 OR1L6Q8NGR2 347 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 RNASE8Q8TDE3 154 aaKnown RBP11.13□□□□□ -0.63
SKA3-202ENST00000314759 SSMEM1Q8WWF3 244 aa11.13□□□□□ -0.63
SKA3-202ENST00000314759 SLC35E1Q96K37 410 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms