RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 IGHV3-74A0A0B4J1X5 117 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 TLCD2A6NGC4 264 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 CD70P32970 193 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 RND2P52198 227 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 ZNF121P58317 390 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 PSG9Q00887 426 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 HEPN1Q6WQI6 88 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 C1orf159Q96HA4 380 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 SUSD3Q96L08 255 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 CEACAM18A8MTB9 384 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 NDUFB6O95139 128 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 IGKV4-1P06312 121 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 LTBRP36941 435 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 ERVK11-1P61568 191 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM231DQ6ZW35 169 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 PPP1R32Q7Z5V6 425 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 C15orf53Q8NAA6 179 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 RPP21Q9H633 154 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 CLEC1BQ9P126 229 aa6.57□□□□□ -1.36
LIMCH1-201ENST00000313860 TCRBV5S4A2TA0A5A2 114 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 SHISA9B4DS77 424 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 SYS1-DBNDD2H3BUS1 97 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 CRYGCP07315 174 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 GLULP15104 373 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 MED25Q71SY5 747 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 C20orf173Q96LM9 149 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 A0A1W2PPE3 182 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 KIR3DS1Q14943 382 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 ACP7Q6ZNF0 438 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 PELI3Q8N2H9 469 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV1OR15-1A0A075B7D0 117 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 G3V4G9 280 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 GPR75O95800 540 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 MOSP00540 346 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 UBE2V1Q13404 147 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 PAQR9Q6ZVX9 377 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 LRP6O75581 1613 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 SLIT3O75094 1523 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 B4GALT1P15291 398 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 CTLA4P16410 223 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 CDAP32320 146 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 C1orf140Q5VVS0 124 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 TMX2-CTNND1H3BSU7 103 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 HCP5Q6MZN7 132 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 CCDC144NLQ6NUI1 221 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 C1orf174Q8IYL3 243 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 LRRC52Q8N7C0 313 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 TSKUQ8WUA8 353 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 MRGPRX3Q96LB0 322 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 DUSP15Q9H1R2 295 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 TCF19Q9Y242 345 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 R4GN57 208 aa6.56□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV4-38-2P0DP08 117 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 CBLL1Q75N03 491 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 RASL10AQ92737 203 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 NEURL3Q96EH8 262 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 IL36BQ9NZH7 164 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 TRAV3A0A0B4J244 114 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 A0A0D9SEW6 157 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 TMPRSS2O15393 492 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV3-23P01764 117 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 HLA-DRB4P13762 266 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 FOXL1Q12952 345 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM104BQ5XKR9 115 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 SLC39A5Q6ZMH5 540 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 SHISA4Q96DD7 197 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 PELI2Q9HAT8 420 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 HLA-DRB4X5D2U9 266 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 PRSS37A4D1T9 235 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 PSMB8P28062 276 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 EVX1P49640 407 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 ZNF83P51522 516 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 BHLHA9Q7RTU4 235 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 ABHD12Q8N2K0 398 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 MZB1Q8WU39 189 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 FOXB1Q99853 325 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 PILRBQ9UKJ0 227 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 NRXN3Q9Y4C0 1643 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 WNK3Q9BYP7 1800 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 IGHV3-49A0A0A0MS15 119 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 IGKV3D-7A0A0C4DH55 119 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 FAM90A27PA6NNH2 459 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 PLPP3O14495 311 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 RUNX3Q13761 415 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 LILRA2Q8N149 483 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 NAT6Q93015 286 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 ZNF576Q9H609 170 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 CHD1O14646 1710 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 IGKV1D-42A0A075B6H8 117 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 FIGNL2A6NMB9 653 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 SERF1AO75920 110 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 TIMP1P01033 207 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 FOXG1P55316 489 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 PRR31Q5SQ13 230 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 OR9G1Q8NH87 305 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 VSTM2LQ96N03 204 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 SLC50A1Q9BRV3 221 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 NRN1Q9NPD7 142 aa6.55□□□□□ -1.36
LIMCH1-201ENST00000313860 LAMB4A4D0S4 1761 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms