RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TLNRD1Q9H1K6 362 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 SNRPCP09234 159 aaKnown RBP8.51□□□□□ -1.05
COL6A3-201ENST00000295550 LINC00869P0C866 280 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 HKR1P10072 659 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 MIC13Q5XKP0 118 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 PSMG3Q9BT73 122 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-201ENST00000295550 FAM181BA6NEQ2 426 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 SMIM10L1P0DMW3 83 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 H2BFSP57053 126 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 TEX29Q8N6K0 151 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 OR11H4Q8NGC9 324 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 SMIM10Q96HG1 83 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 TINAGQ9UJW2 476 aa8.51□□□□□ -1.05
COL6A3-201ENST00000295550 SUMO2P61956 95 aaKnown RBP8.5□□□□□ -1.05
COL6A3-201ENST00000295550 IGKV3D-11A0A0A0MRZ8 115 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 RPL36A-HNRNPH2H7BZ11 118 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 IGKV3-11P04433 115 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 DMRTA2Q96SC8 542 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 C2orf88Q9BSF0 95 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 RIPPLY3P57055 190 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 FAM74A4Q5TZK3 123 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 HBBP68871 147 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 TCF23Q7RTU1 214 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 DNAJC4Q9NNZ3 241 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 TRAV8-6A0A0B4J262 113 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 DLL1O00548 723 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 PNLIPP16233 465 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 TMEM50AO95807 157 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 TYMSP04818 313 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 REG1BP48304 166 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 MGAT2Q10469 447 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 DOPEY1Q5JWR5 2465 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 IGLV1-36A0A0B4J1U3 117 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 C16orf47Q6ZP98 133 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-201ENST00000295550 RTN4RQ9BZR6 473 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 CTSSP25774 331 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 KIAA1644Q3SXP7 199 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 CCDC144NLQ6NUI1 221 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 ST6GALNAC6Q969X2 333 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 ELOVL5Q9NYP7 299 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 ID4P47928 161 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 ZNF56Q15929 161 aa8.5□□□□□ -1.05
COL6A3-201ENST00000295550 CD8AP01732 235 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 CD3EP07766 207 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 LIFP15018 202 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 HIKESHIQ53FT3 197 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 ZNF430Q9H8G1 570 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-201ENST00000295550 SLC25A10Q9UBX3 287 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-201ENST00000295550 S1PR2O95136 353 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 HPRT1P00492 218 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 THY1P04216 161 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 PSG9Q00887 426 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 OR13C6PQ8NH95 151 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 ZNF714Q96N38 554 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 IGKV1D-42A0A075B6H8 117 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 NPIPB13A6NJU9 1138 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 NPIPB4C9JG80 1138 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 SELENOTP62341 195 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 MMD2Q8IY49 270 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 KCNK17Q96T54 332 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 CX3CL1P78423 397 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 HIST1H2BAQ96A08 127 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 SSBP4Q9BWG4 385 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-201ENST00000295550 IGKV3D-15A0A087WSY6 115 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 RRHO14718 337 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 GDF9O60383 454 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 CA11O75493 328 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 TGFAP01135 160 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 IGKV3-15P01624 115 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 TRGC1P0CF51 173 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 GZMHP20718 246 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 SSPNQ14714 243 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 ACER2Q5QJU3 275 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 A0A0G2JK05 382 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 FAM208BQ5VWN6 2430 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 TRAV8-2A0A0B4J237 113 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 A0A1W2PPE3 182 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 LAMTOR1Q6IAA8 161 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 NEUROG1Q92886 237 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 WBP1LQ9NX94 342 aa8.49□□□□□ -1.05
COL6A3-201ENST00000295550 IGKV3OR2-268A0A0C4DH90 116 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 DANCRP0C864 163 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 CENPWQ5EE01 88 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 PAPPA-AS1Q5QFB9 102 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 ZNF362Q5T0B9 420 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-201ENST00000295550 SMRP1Q8NCR6 262 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 PIN1P1O15428 100 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 PLAURQ03405 335 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 NPVFQ9HCQ7 196 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 C19orf67A6NJJ6 358 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 PRDX2P32119 198 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 FHITP49789 147 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 ZNF645Q8N7E2 425 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 J3QT63 122 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 PLSCR2Q9NRY7 297 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 PSMB11A5LHX3 300 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 HOXD4P09016 255 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-201ENST00000295550 COL10A1Q03692 680 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 MEGF9Q9H1U4 602 aa8.48□□□□□ -1.05
COL6A3-201ENST00000295550 A0A1W2PQM1 296 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms