RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 TET2Q6N021 2002 aaPredicted RBP8.04□□□□□ -1.12
CUX1-201ENST00000292535 C2orf16Q68DN1 1984 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 OR13C6PQ8NH95 151 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 ZNF488Q96MN9 340 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 C3AR1Q16581 482 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 PSMG4Q5JS54 123 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 IGKV3D-11A0A0A0MRZ8 115 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 IGKV3-11P04433 115 aa8.04□□□□□ -1.12
CUX1-201ENST00000292535 HSPE1P61604 102 aaKnown RBP8.04□□□□□ -1.12
CUX1-201ENST00000292535 MRPS18BQ9Y676 258 aaKnown RBP8.04□□□□□ -1.12
CUX1-201ENST00000292535 HRKO00198 91 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 PLAUP00749 431 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 ZCCHC14Q8WYQ9 949 aaKnown RBP8.03□□□□□ -1.12
CUX1-201ENST00000292535 TRAV8-7A0A075B6U6 113 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 J3QW42 95 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 RPS11P62280 158 aaKnown RBP eCLIP8.03□□□□□ -1.12
CUX1-201ENST00000292535 HBBP68871 147 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 AGAP20933 346 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 TMEM177Q53S58 311 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 NHSL1Q5SYE7 1610 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 SLC25A34Q6PIV7 304 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 OVCH2Q7RTZ1 564 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 C9orf62Q8N4C0 152 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 TAF15Q92804 592 aaKnown RBP eCLIP8.03□□□□□ -1.12
CUX1-201ENST00000292535 STRCP1A6NGW2 1772 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 NPIPB8E9PQR5 432 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 IGHV4-34P06331 123 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 FTH1P19P0C7X4 201 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 CNTFRP26992 372 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 TNFRSF18Q9Y5U5 241 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 LRTM2Q8N967 370 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 PGPA6NDG6 321 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 MUC1P15941 1255 aaPredicted RBP8.03□□□□□ -1.12
CUX1-201ENST00000292535 MSRB3Q8IXL7 192 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 PSG4Q00888 419 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 ST6GAL2Q96JF0 529 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 IGKV3D-15A0A087WSY6 115 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 UPK3AO75631 287 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 IGKV3-15P01624 115 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 VSIG8P0DPA2 414 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 NPBWR2P48146 333 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 CLEC7AQ9BXN2 247 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 ISOC2Q96AB3 205 aa8.03□□□□□ -1.12
CUX1-201ENST00000292535 CFAP161Q6P656 301 aa8.02□□□□□ -1.12
CUX1-201ENST00000292535 RBKSQ9H477 322 aa8.02□□□□□ -1.12
CUX1-201ENST00000292535 C1QTNF9BB2RNN3 333 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 ISG15P05161 165 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 CD1AP06126 327 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 ASIPP42127 132 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 MVDP53602 400 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 OR11H7Q8NGC8 314 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 LEPROTL1O95214 131 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 MGAT2Q10469 447 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 ZNF385CQ66K41 422 aaPredicted RBP8.02□□□□□ -1.13
CUX1-201ENST00000292535 TRAV39A0A0B4J263 110 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 IRF3Q14653 427 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 KIR3DL3Q8N743 410 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 TRGV3P03979 118 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 OR4D5Q8NGN0 318 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 TLNRD1Q9H1K6 362 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 FOXS1O43638 330 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 ATP5LO75964 103 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 MALP21145 153 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 ZNF146Q15072 292 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 POLQO75417 2590 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 FGFRL1Q8N441 504 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 TMEM74BQ9NUR3 256 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 PTGDSP41222 190 aa8.02□□□□□ -1.13
CUX1-201ENST00000292535 ZNF385AQ96PM9 386 aaKnown RBP8.02□□□□□ -1.13
CUX1-201ENST00000292535 C7orf71A4D174 169 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 RIPPLY2Q5TAB7 128 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 FAM168AQ92567 244 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 DNASE2BQ8WZ79 361 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 RGP1Q92546 391 aaPredicted RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 MEGF10Q96KG7 1140 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 MRPL16Q9NX20 251 aaKnown RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 SEMA5BQ9P283 1151 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 TM4SF5O14894 197 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 TMEM252Q8N6L7 170 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 C8orf88P0DMB2 117 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 SSTR5P35346 364 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 IGF2P01344 180 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 HKR1P10072 659 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 F11RQ9Y624 299 aaKnown RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 EFNB2P52799 333 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 FAM159AQ6UWV7 190 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 ANAPC1Q9H1A4 1944 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 RBMY1BA6NDE4 496 aaKnown RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 RBMY1EA6NEQ0 496 aaKnown RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 RBMY1DP0C7P1 496 aaKnown RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 RBMY1A1P0DJD3 496 aaKnown RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 RBMY1CP0DJD4 496 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 FAM209BQ5JX69 171 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 ABHD12Q8N2K0 398 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 MARF1Q9Y4F3 1742 aaKnown RBP8.01□□□□□ -1.13
CUX1-201ENST00000292535 LINC00862A6NCI5 91 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 HOXA5P20719 270 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 CBLN2Q8IUK8 224 aa8.01□□□□□ -1.13
CUX1-201ENST00000292535 KLK15Q9H2R5 256 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms