RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SPATA31B1PQ5VZV4 182 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 EDARADDQ8WWZ3 215 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 H1FXQ92522 213 aaKnown RBP13.74□□□□□ -0.21
VPS54-201ENST00000272322 HSD17B10Q99714 261 aaKnown RBP13.74□□□□□ -0.21
VPS54-201ENST00000272322 PSMG3Q9BT73 122 aaPredicted RBP13.74□□□□□ -0.21
VPS54-201ENST00000272322 GGACTQ9BVM4 153 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 A0A1B0GW64 132 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 H7BYZ3 331 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 PRB4P10163 310 aaPredicted RBP13.74□□□□□ -0.21
VPS54-201ENST00000272322 THBS3P49746 956 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 PYY3Q5JQD4 70 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 LHFPL4Q7Z7J7 247 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 SAA2-SAA4A0A096LPE2 208 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 PMS2P5A8MQ11 134 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 IFNL4K9M1U5 179 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 PPP1R2P9O14990 202 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 IGKV1-16P04430 117 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 SAA2P0DJI9 122 aaPredicted RBP13.74□□□□□ -0.21
VPS54-201ENST00000272322 GZMHP20718 246 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 P2RY6Q15077 328 aa13.74□□□□□ -0.21
VPS54-201ENST00000272322 CTXND1A0A1B0GTU2 59 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 MGST3O14880 152 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 RAB29O14966 203 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 CCL3L1P16619 93 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 HIPK2Q9H2X6 1198 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 PRO1933Q9H354 126 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 PPIHO43447 177 aaKnown RBP13.73□□□□□ -0.21
VPS54-201ENST00000272322 RPL23P62829 140 aaKnown RBP13.73□□□□□ -0.21
VPS54-201ENST00000272322 OR13D1Q8NGV5 346 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 SNIP1Q8TAD8 396 aaKnown RBP13.73□□□□□ -0.21
VPS54-201ENST00000272322 LURAP1Q96LR2 239 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 J3QW42 95 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 SPINK4O60575 86 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 IGLV1-44P01699 117 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 NPPCP23582 126 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 MRPS11P82912 194 aaKnown RBP13.73□□□□□ -0.21
VPS54-201ENST00000272322 YPEL4Q96NS1 127 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 LRFN3Q9BTN0 628 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 IFI27L2Q9H2X8 130 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 SMDT1Q9H4I9 107 aa13.73□□□□□ -0.21
VPS54-201ENST00000272322 GAR1Q9NY12 217 aaKnown RBP13.73□□□□□ -0.21
VPS54-201ENST00000272322 PPP1R35Q8TAP8 253 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 GCM1Q9NP62 436 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 ARL14EPLP0DKL9 152 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 GALR1P47211 349 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 SELENOVP59797 346 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 ZBTB34Q8NCN2 500 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 TCF19Q9Y242 345 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 A0A1B0GUS0 222 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 S100A8P05109 93 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 ADH4P08319 380 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 C1QTNF9P0C862 333 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 LOXL3P58215 753 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 ZNF114Q8NC26 417 aa13.72□□□□□ -0.21
VPS54-201ENST00000272322 FOXH1O75593 365 aa13.71□□□□□ -0.21
VPS54-201ENST00000272322 PRR30Q53SZ7 412 aaPredicted RBP13.71□□□□□ -0.21
VPS54-201ENST00000272322 SP5Q6BEB4 398 aaPredicted RBP13.71□□□□□ -0.21
VPS54-201ENST00000272322 ZNF66Q6ZN08 573 aa13.71□□□□□ -0.21
VPS54-201ENST00000272322 FAM216AQ8WUB2 273 aa13.71□□□□□ -0.21
VPS54-201ENST00000272322 SEPSECSQ9HD40 501 aaKnown RBP13.71□□□□□ -0.21
VPS54-201ENST00000272322 IGHV3-72A0A0B4J1Y9 119 aa13.71□□□□□ -0.22
VPS54-201ENST00000272322 TRAV1-1A0A0B4J248 108 aa13.71□□□□□ -0.22
VPS54-201ENST00000272322 ZNF891A8MT65 544 aaPredicted RBP13.71□□□□□ -0.22
VPS54-201ENST00000272322 HPRT1P00492 218 aa13.71□□□□□ -0.22
VPS54-201ENST00000272322 PAX6P26367 422 aa13.71□□□□□ -0.22
VPS54-201ENST00000272322 EIF4EBP1Q13541 118 aaPredicted RBP13.71□□□□□ -0.22
VPS54-201ENST00000272322 TREML4Q6UXN2 200 aa13.71□□□□□ -0.22
VPS54-201ENST00000272322 DPPA3Q6W0C5 159 aa13.71□□□□□ -0.22
VPS54-201ENST00000272322 FAM90A26D6RGX4 464 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 FAM78BQ5VT40 261 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 MBNL2Q5VZF2 373 aaKnown RBP13.7□□□□□ -0.22
VPS54-201ENST00000272322 ZNF383Q8NA42 475 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 OR10W1Q8NGF6 305 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 CIB3Q96Q77 187 aaPredicted RBP13.7□□□□□ -0.22
VPS54-201ENST00000272322 OR5B12Q96R08 314 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 NAT8Q9UHE5 227 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 FUT9Q9Y231 359 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 IGHV1-46P01743 117 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 P0C879 139 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 CD82P27701 267 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 OR4A47Q6IF82 309 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 PXMP4Q9Y6I8 212 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 HOXA5P20719 270 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 TMEM170AQ8WVE7 144 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 NEUROG1Q92886 237 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 ABHD17AQ96GS6 310 aa13.7□□□□□ -0.22
VPS54-201ENST00000272322 TRGV10A0A0A0MS01 117 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 SMIM6P0DI80 62 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 GLRXP35754 106 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 DIAPH2-AS1Q14236 149 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 ACOT6Q3I5F7 207 aaPredicted RBP13.69□□□□□ -0.22
VPS54-201ENST00000272322 PRR31Q5SQ13 230 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 RBMXL3Q8N7X1 1067 aaKnown RBP13.69□□□□□ -0.22
VPS54-201ENST00000272322 ENY2Q9NPA8 101 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 RNF7Q9UBF6 113 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 C17orf58Q2M2W7 97 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 PRR7Q8TB68 274 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 DYSFO75923 2080 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 PIGBOS1A0A0B4J2F0 54 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 C17orf112F2Z3M2 114 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms