RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NIPSNAP3BQ9BS92 247 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 TMEM231Q9H6L2 316 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 RPS10P5Q9NQ39 176 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 KPTNQ9Y664 436 aa9.57□□□□□ -0.88
VPS4A-201ENST00000254950 MAP1LC3B2A6NCE7 125 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 MSGN1A6NI15 193 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 CD1BP29016 333 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 PRB3Q04118 309 aaPredicted RBP9.56□□□□□ -0.88
VPS4A-201ENST00000254950 OR10G4Q8NGN3 311 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 OR10G9Q8NGN4 311 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 OR10G7Q8NGN6 311 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 MAP1LC3BQ9GZQ8 125 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 NPVFQ9HCQ7 196 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 MMP26Q9NRE1 261 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 COA4Q9NYJ1 87 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 PITPNC1Q9UKF7 332 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 PRELID1Q9Y255 219 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 SOD3P08294 240 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 KHDC1LQ5JSQ8 128 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 BPESC1Q9GZL8 116 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 C7orf69Q9H7B7 122 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 AUP1Q9Y679 476 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 COL6A3P12111 3177 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 ANKRD34BA5PLL1 514 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 ITGB1BP1O14713 200 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 TAGLN2P37802 199 aaKnown RBP9.56□□□□□ -0.88
VPS4A-201ENST00000254950 CDC34P49427 236 aaPredicted RBP9.56□□□□□ -0.88
VPS4A-201ENST00000254950 RHOBP62745 196 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 RPL30P62888 115 aaKnown RBP9.56□□□□□ -0.88
VPS4A-201ENST00000254950 TEPPQ6URK8 271 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 ZNF525Q8N782 197 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 LHFPL5Q8TAF8 219 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 WDFY3Q8IZQ1 3526 aa9.56□□□□□ -0.88
VPS4A-201ENST00000254950 IGHV3OR16-10A0A075B7F0 116 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 IGHV2-26A0A0B4J1V2 119 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 ATP5IP56385 69 aaPredicted RBP9.55□□□□□ -0.88
VPS4A-201ENST00000254950 DUX4L9Q6RFH8 374 aaPredicted RBP9.55□□□□□ -0.88
VPS4A-201ENST00000254950 LDLRAD3Q86YD5 345 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 SLC25A22Q9H936 323 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 MLXQ9UH92 298 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 J3QKU1 62 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 CFDP00746 253 aaPredicted RBP9.55□□□□□ -0.88
VPS4A-201ENST00000254950 RUNX1Q01196 453 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 ID3Q02535 119 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 BPIFCQ8NFQ6 507 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 RXFP4Q8TDU9 374 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 SSMEM1Q8WWF3 244 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 OR4C12Q96R67 309 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 RNF126Q9BV68 326 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 CORTO00230 105 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 COMPP49747 757 aaPredicted RBP9.55□□□□□ -0.88
VPS4A-201ENST00000254950 SERF2P84101 59 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 LAMTOR1Q6IAA8 161 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 OR1L6Q8NGR2 347 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 CMTM2Q8TAZ6 248 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 CXorf58Q96LI9 332 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 LIME1Q9H400 295 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 TNFRSF19Q9NS68 423 aa9.55□□□□□ -0.88
VPS4A-201ENST00000254950 YLPM1P49750 1951 aaKnown RBP9.55□□□□□ -0.88
VPS4A-201ENST00000254950 RNF222A6NCQ9 220 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 H0YIZ8 118 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 SLC31A2O15432 143 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 MPDU1O75352 247 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 TGFAP01135 160 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 LHBP01229 141 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 GUK1Q16774 197 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 SPRNQ5BIV9 151 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 SLC25A48Q6ZT89 311 aaKnown RBP9.54□□□□□ -0.88
VPS4A-201ENST00000254950 C22orf34Q6ZV56 151 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 HSD17B13Q7Z5P4 300 aaPredicted RBP9.54□□□□□ -0.88
VPS4A-201ENST00000254950 KAAG1Q9UBP8 84 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 IGSF23A1L1A6 192 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 M0R1W7 72 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 HNF1AP20823 631 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 ECSCRQ19T08 205 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 HCP5Q6MZN7 132 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 MED9Q9NWA0 146 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 RPH3ALQ9UNE2 315 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 RNF24Q9Y225 148 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 DBX1A6NMT0 343 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 GNG7O60262 68 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 LOXP28300 417 aaPredicted RBP9.54□□□□□ -0.88
VPS4A-201ENST00000254950 B2MP61769 119 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 AANATQ16613 207 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 UQCC3Q6UW78 93 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 OR1L4Q8NGR5 311 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 FBXL15Q9H469 300 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 PARP11Q9NR21 331 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 NOTCH2Q04721 2471 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 IGKV1D-33P01593 117 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 IGKV1-33P01594 117 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 CRYBA1P05813 215 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 IFITM2Q01629 132 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 OR4F5Q8NH21 305 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 OR4F4Q96R69 305 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 SLC45A2Q9UMX9 530 aa9.54□□□□□ -0.88
VPS4A-201ENST00000254950 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.53□□□□□ -0.88
VPS4A-201ENST00000254950 NDUFS8O00217 210 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 UPK2O00526 184 aa9.53□□□□□ -0.88
VPS4A-201ENST00000254950 SAA1P0DJI8 122 aaPredicted RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms