RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 OR52I1Q8NGK6 324 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 LGALS14Q8TCE9 139 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 WDFY2Q96P53 400 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 SMIM3Q9BZL3 60 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 PGPEP1Q9NXJ5 209 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 A0A0B4J2A0 478 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 J3QR06 171 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 SLC17A3O00476 420 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 PRSS2P07478 247 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 IFI6P09912 130 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF826PQ6ZT77 177 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 C16orf82Q7Z2V1 217 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 KIR3DL3Q8N743 410 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 DTD1Q8TEA8 209 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 SORT1Q99523 831 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF275Q9NSD4 429 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-218ENST00000640036 CALYQ9NYX4 217 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 SHPKQ9UHJ6 478 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 KIAA1671Q9BY89 1806 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 C17orf51A8MQB3 221 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 H3BVH4 76 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 CLLU1Q5K131 121 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 FUNDC1Q8IVP5 155 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 GPR32P1Q8NGA4 272 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 SMIM19Q96E16 107 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 F8P00451 2351 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 AGPAT2O15120 278 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 TCF23Q7RTU1 214 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 MYPOPQ86VE0 399 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-218ENST00000640036 RAB40CQ96S21 281 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 EMCNQ9ULC0 261 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 IGKV3D-15A0A087WSY6 115 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 LYNX1G3V0Z9 82 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 IGKV3-15P01624 115 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 LYNX1P0DP58 116 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 C3orf36Q3SXR2 165 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 MINOS1Q5TGZ0 78 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 YIPF6Q96EC8 236 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 SRXN1Q9BYN0 137 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 NXF2Q9GZY0 626 aaKnown RBP4.28□□□□□ -1.72
SCN1A-218ENST00000640036 NAA50Q9GZZ1 169 aaKnown RBP4.28□□□□□ -1.72
SCN1A-218ENST00000640036 C11orf54Q9H0W9 315 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-218ENST00000640036 KCNK7Q9Y2U2 307 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 MINOS1-NBL1R4GNA1 71 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 KBTBD11-OT1A0A1B0GTJ5 212 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 CTDSP2O14595 271 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 RBFOX2O43251 390 aaKnown RBP eCLIP4.28□□□□□ -1.72
SCN1A-218ENST00000640036 CRPP02741 224 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 IAPPP10997 89 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 PMELP40967 661 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 FHITP49789 147 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 TXNDC17Q9BRA2 123 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 TOLLIPQ9H0E2 274 aa4.28□□□□□ -1.72
SCN1A-218ENST00000640036 RBFOX1Q9NWB1 397 aaKnown RBP4.28□□□□□ -1.72
SCN1A-218ENST00000640036 ARPC1BO15143 372 aaKnown RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 MOSP00540 346 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 IGKV3-20P01619 116 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 SEMG1P04279 462 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 MELTFP08582 738 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TRGC1P0CF51 173 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 HKR1P10072 659 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 UCP3P55916 312 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 RPL8P62917 257 aaKnown RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 NCMAPQ5T1S8 102 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 LEMD1Q68G75 181 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TBC1D26Q86UD7 250 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 CRIPAKQ8N1N5 446 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TMEM52Q8NDY8 209 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 SFRP2Q96HF1 295 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 NIT2Q9NQR4 276 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 FLNBO75369 2602 aaKnown RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TNRC6AQ8NDV7 1962 aaKnown RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TNFSF13O75888 250 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 ERGP11308 486 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 RIPPLY3P57055 190 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 LGALSLQ3ZCW2 172 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 C10orf128Q5T292 105 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 PDPNQ86YL7 162 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 GALNT14Q96FL9 552 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TLNRD1Q9H1K6 362 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 DIMT1Q9UNQ2 313 aaKnown RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 TRAPPC1Q9Y5R8 145 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 GREB1LQ9C091 1923 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 C7orf72A4D263 438 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 PDE6DO43924 150 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 SNRPBP14678 240 aaKnown RBP4.27□□□□□ -1.73
SCN1A-218ENST00000640036 NANOGP1Q8N7R0 232 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 FAM210BQ96KR6 192 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 LINC01587Q99440 93 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 H3BRM9 83 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 NPFFO15130 113 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 SSSCA1O60232 199 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 MST1P26927 711 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 DPPA3Q6W0C5 159 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 MDS2Q8NDY4 140 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 NAT8BQ9UHF3 227 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 A0A0U1RQV5 110 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 DUXBA0A1W2PPF3 345 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 DHRS7CA6NNS2 312 aa4.27□□□□□ -1.73
SCN1A-218ENST00000640036 CEACAM18A8MTB9 384 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms