RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 IGKV1D-33P01593 117 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 IGKV1-33P01594 117 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 SPCS3P61009 180 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 TLE1Q04724 770 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 CORO2AQ92828 525 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 ISOC2Q96AB3 205 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 SAP30LQ9HAJ7 183 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 TMEM140Q9NV12 185 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 PCNX1Q96RV3 2341 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 CEP295Q9C0D2 2601 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 EIF3GO75821 320 aaKnown RBP eCLIP17.71■□□□□ 0.43
CLN6-224ENST00000638076 MRPS11P82912 194 aaKnown RBP17.71■□□□□ 0.43
CLN6-224ENST00000638076 RELBQ01201 579 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 TFF3Q07654 80 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 ACSM6Q6P461 480 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 RPP25LQ8N5L8 163 aaKnown RBP17.71■□□□□ 0.43
CLN6-224ENST00000638076 LINC00574Q9H8X3 128 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 MSRB2Q9Y3D2 182 aa17.71■□□□□ 0.43
CLN6-224ENST00000638076 HCFC1P51610 2035 aa17.71■□□□□ 0.42
CLN6-224ENST00000638076 MAP1LC3B2A6NCE7 125 aa17.7■□□□□ 0.42
CLN6-224ENST00000638076 NKX6-3A6NJ46 265 aa17.7■□□□□ 0.42
CLN6-224ENST00000638076 H3BQ15 152 aa17.7■□□□□ 0.42
CLN6-224ENST00000638076 VWC2Q2TAL6 325 aa17.7■□□□□ 0.42
CLN6-224ENST00000638076 MAP1LC3BQ9GZQ8 125 aa17.7■□□□□ 0.42
CLN6-224ENST00000638076 TRAV38-1A0A0B4J264 116 aa17.7■□□□□ 0.42
CLN6-224ENST00000638076 TUBA4BQ9H853 241 aa17.7■□□□□ 0.42
CLN6-224ENST00000638076 BCL2P10415 239 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 PLA2G5P39877 138 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 THBS3P49746 956 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 ZNF429Q86V71 674 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 ZNF383Q8NA42 475 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 OR52E5Q8NH55 327 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 HIST1H2BAQ96A08 127 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 NPCDR1Q9BY65 106 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 EGLN1Q9GZT9 426 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 SLC39A9Q9NUM3 307 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 CISD1Q9NZ45 108 aaKnown RBP17.69■□□□□ 0.42
CLN6-224ENST00000638076 SLC25A10Q9UBX3 287 aaPredicted RBP17.69■□□□□ 0.42
CLN6-224ENST00000638076 hADV38S2A0JD32 116 aa17.69■□□□□ 0.42
CLN6-224ENST00000638076 RPUSD1Q9UJJ7 312 aaKnown RBP17.69■□□□□ 0.42
CLN6-224ENST00000638076 A0A1W2PPE2 198 aa17.68■□□□□ 0.42
CLN6-224ENST00000638076 IFNA10P01566 189 aa17.68■□□□□ 0.42
CLN6-224ENST00000638076 ARG1P05089 322 aa17.68■□□□□ 0.42
CLN6-224ENST00000638076 VKORC1Q9BQB6 163 aa17.68■□□□□ 0.42
CLN6-224ENST00000638076 NGBQ9NPG2 151 aa17.68■□□□□ 0.42
CLN6-224ENST00000638076 LINC00312Q9Y6C7 94 aa17.68■□□□□ 0.42
CLN6-224ENST00000638076 VSTM5A8MXK1 200 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 LY86O95711 162 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 ERVFRD-1P60508 538 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 PDLIM3Q53GG5 364 aaPredicted RBP17.67■□□□□ 0.42
CLN6-224ENST00000638076 CCL17Q92583 94 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 RAB39BQ96DA2 213 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 RHOVQ96L33 236 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 HEYLQ9NQ87 328 aaPredicted RBP17.67■□□□□ 0.42
CLN6-224ENST00000638076 TRGV8A0A0C4DH27 118 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 A0A1W2PPH5 198 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 SHISA9B4DS77 424 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 TMEM178BH3BS89 294 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 VDAC2P45880 294 aaPredicted RBP17.67■□□□□ 0.42
CLN6-224ENST00000638076 RPP30P78346 268 aaKnown RBP17.67■□□□□ 0.42
CLN6-224ENST00000638076 FFAR4Q5NUL3 377 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 C1orf87Q8N0U7 546 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 NEUROG1Q92886 237 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 LHX4Q969G2 390 aa17.67■□□□□ 0.42
CLN6-224ENST00000638076 KALRNO60229 2985 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 PPIAL4EA0A075B759 164 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 PPIAL4DF5H284 164 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 PPIAL4FP0DN26 164 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 MDKP21741 143 aaPredicted RBP17.66■□□□□ 0.42
CLN6-224ENST00000638076 RAB13P51153 203 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 TMPRSS3P57727 454 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 TMEM30BQ3MIR4 351 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 SLC25A48Q6ZT89 311 aaKnown RBP17.66■□□□□ 0.42
CLN6-224ENST00000638076 ZNF709Q8N972 641 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 OR10G4Q8NGN3 311 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 OR10G9Q8NGN4 311 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 OR10G7Q8NGN6 311 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 ADTRPQ96IZ2 230 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 NIPSNAP3BQ9BS92 247 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 SAV1Q9H4B6 383 aaPredicted RBP17.66■□□□□ 0.42
CLN6-224ENST00000638076 SLC25A22Q9H936 323 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 PPIAL4AQ9Y536 164 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 MBP02144 154 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 MT-ND4LP03901 98 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 RAB11AP62491 216 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 RPL31P62899 125 aaKnown RBP17.66■□□□□ 0.42
CLN6-224ENST00000638076 ZFP82Q8N141 532 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 RNASE6Q93091 150 aaKnown RBP17.66■□□□□ 0.42
CLN6-224ENST00000638076 ZNRD1Q9P1U0 126 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 PTPRQQ9UMZ3 2332 aa17.66■□□□□ 0.42
CLN6-224ENST00000638076 ROS1P08922 2347 aa17.65■□□□□ 0.42
CLN6-224ENST00000638076 E7EQL1 145 aa17.65■□□□□ 0.42
CLN6-224ENST00000638076 RRHO14718 337 aa17.65■□□□□ 0.42
CLN6-224ENST00000638076 HMGB3O15347 200 aaKnown RBP17.65■□□□□ 0.42
CLN6-224ENST00000638076 FOLR2P14207 255 aa17.65■□□□□ 0.42
CLN6-224ENST00000638076 CD1BP29016 333 aa17.65■□□□□ 0.42
CLN6-224ENST00000638076 OR4A47Q6IF82 309 aa17.65■□□□□ 0.42
CLN6-224ENST00000638076 DMRTC2Q8IXT2 367 aaPredicted RBP17.65■□□□□ 0.42
CLN6-224ENST00000638076 ZCCHC14Q8WYQ9 949 aaKnown RBP17.65■□□□□ 0.42
CLN6-224ENST00000638076 TMEM106BQ9NUM4 274 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms