RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 IGKV1-33P01594 117 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 SAA2P0DJI9 122 aaPredicted RBP7.87□□□□□ -1.15
CLN3-261ENST00000637686 RRASP10301 218 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 AKR1C4P17516 323 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 PI3P19957 117 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 RAB25P57735 213 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 PROK1P58294 105 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 KRTAP10-3P60369 221 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 BLCAPP62952 87 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 SRSF4Q08170 494 aaKnown RBP7.87□□□□□ -1.15
CLN3-261ENST00000637686 TMEM187Q14656 261 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 Q6ZS46 218 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 TBC1D26Q86UD7 250 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 WFDC12Q8WWY7 111 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 C5orf30Q96GV9 206 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 ABHD14BQ96IU4 210 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 TMEM56Q96MV1 263 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 RBM14Q96PK6 669 aaKnown RBP7.87□□□□□ -1.15
CLN3-261ENST00000637686 TMEM222Q9H0R3 208 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 OR51J1Q9H342 316 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 ZNF702PQ9H963 129 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 PRELID3BQ9Y3B1 194 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 TMEM56-RWDD3S4R434 201 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 ANK2Q01484 3957 aa7.87□□□□□ -1.15
CLN3-261ENST00000637686 ATG12O94817 140 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 OR2F2O95006 317 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 CDS2O95674 445 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 TMEM11P17152 192 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 VAMP1P23763 118 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 MC5RP33032 325 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 BCAP31P51572 246 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 RRAS2P62070 204 aaPredicted RBP7.86□□□□□ -1.15
CLN3-261ENST00000637686 HES1Q14469 280 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 HABP2Q14520 560 aaPredicted RBP7.86□□□□□ -1.15
CLN3-261ENST00000637686 HNF4GQ14541 408 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 PHLDA2Q53GA4 152 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 SHISA2Q6UWI4 295 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 C16orf82Q7Z2V1 217 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 TGIF2LXQ8IUE1 241 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 LGI3Q8N145 548 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 Q8N2B8 174 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 C12orf45Q8N5I9 185 aaPredicted RBP7.86□□□□□ -1.15
CLN3-261ENST00000637686 OR5AN1Q8NGI8 311 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 OR2T6Q8NHC8 308 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 GLYATL2Q8WU03 294 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 DDB2Q92466 427 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 RBMXL1Q96E39 390 aaKnown RBP7.86□□□□□ -1.15
CLN3-261ENST00000637686 PRSS22Q9GZN4 317 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 PLEKHA2Q9HB19 425 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 COMMD9Q9P000 198 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 RNF150Q9ULK6 438 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 TMED3Q9Y3Q3 217 aa7.86□□□□□ -1.15
CLN3-261ENST00000637686 HMX3A6NHT5 357 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 SH2D7A6NKC9 451 aaPredicted RBP7.85□□□□□ -1.15
CLN3-261ENST00000637686 M0R1X1 148 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 AMY1AP04745 511 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 OR5AC1P0C628 307 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 SLC25A6P12236 298 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 CD1BP29016 333 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 ARSJQ5FYB0 599 aaPredicted RBP7.85□□□□□ -1.15
CLN3-261ENST00000637686 PDPNQ86YL7 162 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 RBPMSQ93062 196 aaKnown RBP7.85□□□□□ -1.15
CLN3-261ENST00000637686 EAF1Q96JC9 268 aaPredicted RBP7.85□□□□□ -1.15
CLN3-261ENST00000637686 RNF5Q99942 180 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 SEC22CQ9BRL7 303 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 AIFM2Q9BRQ8 373 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 MRPL20Q9BYC9 149 aaKnown RBP7.85□□□□□ -1.15
CLN3-261ENST00000637686 MED28Q9H204 178 aa7.85□□□□□ -1.15
CLN3-261ENST00000637686 TNCP24821 2201 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 LINC00473A8K010 186 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 SSNA1O43805 119 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 HPRT1P00492 218 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 APOA2P02652 100 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 SERPINE2P07093 398 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 FGF2P09038 288 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 SULT1A3P0DMM9 295 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 SULT1A4P0DMN0 295 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 CT45A6P0DMU7 189 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 CT45A5P0DMU8 189 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 CT45A7P0DMV0 189 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 RPL30P62888 115 aaKnown RBP7.84□□□□□ -1.15
CLN3-261ENST00000637686 CBX3Q13185 183 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 EBI3Q14213 229 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 POU2AF1Q16633 256 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 RTL8BQ17RB0 113 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 TMEM95Q3KNT9 176 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 RPL39P5Q59GN2 51 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 FAM219AQ8IW50 185 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 OR2T10Q8NGZ9 312 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 OR4S2Q8NH73 311 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 TCTEX1D2Q8WW35 142 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 LSM10Q969L4 123 aaKnown RBP7.84□□□□□ -1.15
CLN3-261ENST00000637686 TP53RKQ96S44 253 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 CITED1Q99966 193 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 NABP2Q9BQ15 211 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 SERTAD4Q9NUC0 356 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 CACFD1Q9UGQ2 172 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 MOB4Q9Y3A3 225 aa7.84□□□□□ -1.15
CLN3-261ENST00000637686 A0A1B0GVG6 124 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 NCBP2LA6PVI3 153 aaKnown RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms