RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 C1QL4Q86Z23 238 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 LILRB2Q8N423 598 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 RSG1Q9BU20 258 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 TMEM106BQ9NUM4 274 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 TRAV20A0A0B4J274 112 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 ZNF729A6NN14 1252 aaPredicted RBP12.88□□□□□ -0.35
CLN3-251ENST00000636853 HPRT1P00492 218 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 CHRNB4P30926 498 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 RAB7AP51149 207 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 RPS16P62249 146 aaKnown RBP12.88□□□□□ -0.35
CLN3-251ENST00000636853 HBG1P69891 147 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 HBG2P69892 147 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 GUK1Q16774 197 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 C1orf87Q8N0U7 546 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 LYG1Q8N1E2 194 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 FAM216AQ8WUB2 273 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 OR4C12Q96R67 309 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 S1PR3Q99500 378 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 SCRT1Q9BWW7 348 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 QTRT1Q9BXR0 403 aaKnown RBP12.88□□□□□ -0.35
CLN3-251ENST00000636853 NBASA2RRP1 2371 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 FBP1P09467 338 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 APOBEC3AP31941 199 aaPredicted RBP12.88□□□□□ -0.35
CLN3-251ENST00000636853 PPT1P50897 306 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 LYPD2Q6UXB3 125 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 TMEM14EPQ6UXP3 125 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 SCGB1C1Q8TD33 95 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 DTD1Q8TEA8 209 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 CORO2AQ92828 525 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 EIF5A2Q9GZV4 153 aaKnown RBP12.88□□□□□ -0.35
CLN3-251ENST00000636853 TMPRSS5Q9H3S3 457 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 ZNRD1Q9P1U0 126 aa12.88□□□□□ -0.35
CLN3-251ENST00000636853 hADV38S2A0JD32 116 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 ITGB1BP1O14713 200 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 CCL20P78556 96 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 FABP9Q0Z7S8 132 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 RHEBQ15382 184 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 AKR1C8PQ5T2L2 129 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 ZNF439Q8NDP4 499 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 MIOXQ9UGB7 285 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 CEBPZOSA8MTT3 80 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 RAB5AP20339 215 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 RPL31P62899 125 aaKnown RBP12.87□□□□□ -0.35
CLN3-251ENST00000636853 ADORA2A-AS1P86434 159 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 SLC38A11Q08AI6 406 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 ZNF600Q6ZNG1 722 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 DDB2Q92466 427 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 MS4A5Q9H3V2 200 aa12.87□□□□□ -0.35
CLN3-251ENST00000636853 C7orf77A4D0Y5 90 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 AP4M1O00189 453 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 SIAH2O43255 324 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 CCL3L1P16619 93 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 MRPS11P82912 194 aaKnown RBP12.86□□□□□ -0.35
CLN3-251ENST00000636853 FBXL19-AS1Q494R0 122 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 SPSB3Q6PJ21 355 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 LINC00574Q9H8X3 128 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 RPS10P5Q9NQ39 176 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 CISD1Q9NZ45 108 aaKnown RBP12.86□□□□□ -0.35
CLN3-251ENST00000636853 RPUSD1Q9UJJ7 312 aaKnown RBP12.86□□□□□ -0.35
CLN3-251ENST00000636853 GAB2Q9UQC2 676 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 LINC00312Q9Y6C7 94 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 UBE2L5PA0A1B0GUS4 154 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 HNF4GQ14541 408 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 H1FXQ92522 213 aaKnown RBP12.86□□□□□ -0.35
CLN3-251ENST00000636853 SMDT1Q9H4I9 107 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 DMRT1Q9Y5R6 373 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 COL6A6A6NMZ7 2263 aa12.86□□□□□ -0.35
CLN3-251ENST00000636853 TRAV3A0A0B4J244 114 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 A0A1B0GW64 132 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 RBFOX2O43251 390 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLN3-251ENST00000636853 IFNA17P01571 189 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 OR8U8P0C7N1 319 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 LRRC75BQ2VPJ9 315 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 AWAT1Q58HT5 328 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 ZNF383Q8NA42 475 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 NQO2P16083 231 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 ERVK-16P61578 105 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 LY6DQ14210 128 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 EFNB3Q15768 340 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 TMEM200BQ69YZ2 307 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 OR4A16Q8NH70 328 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 WDR61Q9GZS3 305 aaKnown RBP12.85□□□□□ -0.35
CLN3-251ENST00000636853 VSIRQ9H7M9 311 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 CTSZQ9UBR2 303 aa12.85□□□□□ -0.35
CLN3-251ENST00000636853 TET2Q6N021 2002 aaPredicted RBP12.84□□□□□ -0.35
CLN3-251ENST00000636853 CHD8Q9HCK8 2581 aa12.84□□□□□ -0.35
CLN3-251ENST00000636853 PMS2P5A8MQ11 134 aa12.84□□□□□ -0.35
CLN3-251ENST00000636853 B9A039 149 aa12.84□□□□□ -0.35
CLN3-251ENST00000636853 TNFRSF13BO14836 293 aaPredicted RBP12.84□□□□□ -0.35
CLN3-251ENST00000636853 PPIHO43447 177 aaKnown RBP12.84□□□□□ -0.35
CLN3-251ENST00000636853 KIR2DS2P43631 304 aa12.84□□□□□ -0.35
CLN3-251ENST00000636853 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.84□□□□□ -0.35
CLN3-251ENST00000636853 OR4S2Q8NH73 311 aa12.84□□□□□ -0.35
CLN3-251ENST00000636853 RARRES2Q99969 163 aa12.84□□□□□ -0.35
CLN3-251ENST00000636853 TMEM140Q9NV12 185 aa12.84□□□□□ -0.35
CLN3-251ENST00000636853 IGHV1-69-2A0A0G2JMI3 117 aa12.83□□□□□ -0.35
CLN3-251ENST00000636853 NDUFB3O43676 98 aa12.83□□□□□ -0.35
CLN3-251ENST00000636853 CLN5O75503 358 aa12.83□□□□□ -0.35
CLN3-251ENST00000636853 THBS3P49746 956 aa12.83□□□□□ -0.35
CLN3-251ENST00000636853 MEF2CQ06413 473 aaPredicted RBP12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms